Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04939 ATGACGTGCTCACTCTCGAAAAAAGATCGAAATTCTGATGCCAAAACCAAGGCAGTATGCAAAATATCAATTACCAAGCTGAAGAAGAGAAAATCTCTTCCAGAGAGCTCTCATGAAAACAGCATGAAACAAGATTCTGATGCAAAGGAGAAGAAAAAGAAACAAGATTCTCCTGAAAAGAGGGTGAAACAAAGCTCATTCTCAGCGCCGCTGGTGATAAAAGAATCCTCAGAACATGATTCTGATGCAAGGGAGAAGAAACCAAATACCATGAAGAGAAAATCACTTTTAGAAGGTTATTATGAAAAGATGAAGAAACAGGAACATGATTCTCATGAAAAGAGGGTGAAACACAGCTCATTCTCGGCGCCGCTAGTGATAAAAGAATCGTTAGAATATGATTCTGATGCAAGGGAGAAGAAACCAGATACCATGAAGAGAAAATCACTTTTAGAAGGTTATTATGAAAAGAAGAAGAAACAGAAACAAGATTCTCATGAAAAGAGAGTGAAACACAGCTCATTCTCGGTGCCGCTAGTGATAAAAGAATCGTTAGAACATGATTCTGATGCAAGGGAGAAGAAACCAAATATCATTAAGAGAAAATCCACTTCAGAAACCTATGATGAAAAGATGAAGAAACCATTAATCCTTGATGACGAGCCAGAAGAATTCACCACTAAGATGTTAATTGGTGAATCCTCAAGAAGCTCATGTGGTATATGCTTTGATTTGAAAACAGATTTGGATATGTTCAAAAGAAAGAGTTGCAACCACCTCTTTTGTGTTGATTGTATTTCCAGATATGTGGATTCTCAACTCAACAATAATGTGGTTAAGGTGACTTGTCCAACTCCAAATTGTTCTGCAAAATTGTTTCCAAGACATTTGCAACATATTTTGCCTAAAGAATTTATAGATCGATGGGAATTGGCAAAGTACGAGTCTAAGATTGCATTGGAGCAAAAGACTTATTGTGCATTCAAGGATTGTTCTGTTTTGTTGGTGAATGATAATGATATGGGAGAGGTTTTGACTAGTTGTGAGTGTCCGTCTTGTCACCGGCTATTCTGTGCACAATGTAAGGTTCCATGGCATGCGGAGATGAACTGTCAGGAGTTTCATGATTTGAAACGCAATACAAATGAAGTAGATTTGGATGATAGGTTTTTGAAGTTAGCTAAAATAAACAAGTGGCAGAGATGTCCAAATTGCTCTATCTATGTCAAGAGAAGTAGTGGATGTGAACACATGAAATGCAGATGGTAG 1269 0.3743 MTCSLSKKDRNSDAKTKAVCKISITKLKKRKSLPESSHENSMKQDSDAKEKKKKQDSPEKRVKQSSFSAPLVIKESSEHDSDAREKKPNTMKRKSLLEGYYEKMKKQEHDSHEKRVKHSSFSAPLVIKESLEYDSDAREKKPDTMKRKSLLEGYYEKKKKQKQDSHEKRVKHSSFSVPLVIKESLEHDSDAREKKPNIIKRKSTSETYDEKMKKPLILDDEPEEFTTKMLIGESSRSSCGICFDLKTDLDMFKRKSCNHLFCVDCISRYVDSQLNNNVVKVTCPTPNCSAKLFPRHLQHILPKEFIDRWELAKYESKIALEQKTYCAFKDCSVLLVNDNDMGEVLTSCECPSCHRLFCAQCKVPWHAEMNCQEFHDLKRNTNEVDLDDRFLKLAKINKWQRCPNCSIYVKRSSGCEHMKCRW 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04939 422 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 100 420 IPR031127 GO:0004842|GO:0016567
Mepo3g04939 422 SUPERFAMILY RING/U-box 234 316 - -
Mepo3g04939 422 MobiDBLite consensus disorder prediction 28 61 - -
Mepo3g04939 422 ProSitePatterns Zinc finger RING-type signature. 257 266 IPR017907 -
Mepo3g04939 422 Pfam IBR domain, a half RING-finger domain 312 371 IPR002867 GO:0008270
Mepo3g04939 422 CDD BRcat_RBR_unk 322 374 - -
Mepo3g04939 422 MobiDBLite consensus disorder prediction 131 173 - -
Mepo3g04939 422 MobiDBLite consensus disorder prediction 75 119 - -
Mepo3g04939 422 MobiDBLite consensus disorder prediction 186 206 - -
Mepo3g04939 422 SUPERFAMILY RING/U-box 320 375 - -
Mepo3g04939 422 SMART ibrneu5 307 371 IPR002867 GO:0008270
Mepo3g04939 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 322 IPR013083 -
Mepo3g04939 422 ProSiteProfiles Zinc finger RING-type profile. 239 287 IPR001841 -
Mepo3g04939 422 Pfam Zinc finger, C3HC4 type (RING finger) 239 284 IPR018957 GO:0046872
Mepo3g04939 422 Gene3D - 369 421 - -
Mepo3g04939 422 MobiDBLite consensus disorder prediction 1 173 - -
Mepo3g04939 422 SUPERFAMILY RING/U-box 389 420 - -
Mepo3g04939 422 ProSiteProfiles TRIAD supradomain profile. 235 422 IPR044066 -
Mepo3g04939 422 FunFam RBR-type E3 ubiquitin transferase 234 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04939 Mepo-Chr3 61757426 61759011 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04939 227 421 C3H Transcription Factor Family AT2G19610 26.961 1.86e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04939 K11975 - mtr:25481406 682.945