Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04934 ATGACATCATATTCAAGGAGATCAAGGTATTCCCCCTCTCCCTCGCCCTCGCCTTCTCCATACAGGCGATACAGTAGGTCTGTTTCCCGGTCTCTTTCAAGGAGCGTAACACCAGATGTGGAAAATCCAGGGAACAATTTGTATGTGACAGGACTGTCTCCTAGGATCACCAAGAGGGAACTGGAGAAGCATTTTTCTGCTGAGGGAAAAGTGGTAGATGTCCATCTGGTTGTTGATCCATGGACAAGGGAATCCCGTGGTTTTGGATTTGTGACAATGGATACTTTAGAAGATGCTGATCGTTGTGTGAAGTATCTGAATCGCTCTGTACTTGAAGGCCGTGTTATTACTGTTGAGAAGGCCAGAAGAGGACGCGGTCGAACCCCAACACCTGGGAAATATCTTGGTCTCAAAACTATTCGAGGACGGCGACGTTCTCCAAGCTACTCTCCTCGACGATCTCCTAGCTATTCTCCTTATAGAAGAAGCTACAGTCGTTCGCCTTATTCATCGGACCGAAGTAGGAGTCGCTCTTACTCACCTGATTACAGGCGAAGGAGGTCTTACTCTCCTGACTACAGGCGAAGGAGGGCTTGCTCGCCATACTACAGTCGACGCAGATCGTACTATCGTTATGACCGGCACAGATCATATTCTCGGTCTCGCTCTCCTTATAGCAGGTCTCCTGTCAGAATGCGTGACAGATGCTCTCCCTATGGTTCCAGATATGAATCACCTGACAATAGCTACTATGGAAGATACCGTTACAGGTCGGTTTCTCGAAGTGTCTCACCAAGGCCTAGGAGGTCAAGGAGGAGCTACTCGCGAAGTGCCTCTCCTGTTCGAAGTGTCTCCCCCAGGCCAAGAAAGAGATCAGGAAGGAGTCATTCAAGAAGCTCCAGAAGGAGTGGTGGTTATTCGAAAGTTAAGCATTCTCGATCAAGAAGCTCAAGTGTGAGTGCGAGTTCAAGATCGTTTTCAAGGTCCAACACTCCTGGAACTACCTCTCCTTCAAATTGA 1020 0.4843 MTSYSRRSRYSPSPSPSPSPYRRYSRSVSRSLSRSVTPDVENPGNNLYVTGLSPRITKRELEKHFSAEGKVVDVHLVVDPWTRESRGFGFVTMDTLEDADRCVKYLNRSVLEGRVITVEKARRGRGRTPTPGKYLGLKTIRGRRRSPSYSPRRSPSYSPYRRSYSRSPYSSDRSRSRSYSPDYRRRRSYSPDYRRRRACSPYYSRRRSYYRYDRHRSYSRSRSPYSRSPVRMRDRCSPYGSRYESPDNSYYGRYRYRSVSRSVSPRPRRSRRSYSRSASPVRSVSPRPRKRSGRSHSRSSRRSGGYSKVKHSRSRSSSVSASSRSFSRSNTPGTTSPSN 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04934 339 MobiDBLite consensus disorder prediction 122 200 - -
Mepo3g04934 339 CDD RRM_SF 47 119 - -
Mepo3g04934 339 MobiDBLite consensus disorder prediction 287 309 - -
Mepo3g04934 339 SUPERFAMILY RNA-binding domain, RBD 32 148 IPR035979 GO:0003676
Mepo3g04934 339 MobiDBLite consensus disorder prediction 20 45 - -
Mepo3g04934 339 MobiDBLite consensus disorder prediction 214 339 - -
Mepo3g04934 339 MobiDBLite consensus disorder prediction 149 176 - -
Mepo3g04934 339 SMART rrm1_1 46 119 IPR000504 GO:0003723
Mepo3g04934 339 Gene3D - 2 128 IPR012677 -
Mepo3g04934 339 MobiDBLite consensus disorder prediction 310 339 - -
Mepo3g04934 339 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 43 235 - -
Mepo3g04934 339 MobiDBLite consensus disorder prediction 1 45 - -
Mepo3g04934 339 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 123 IPR000504 GO:0003723
Mepo3g04934 339 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 116 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04934 Mepo-Chr3 61699279 61702056 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04934 46 127 Eukaryotic Initiation Factors Gene Family AT2G36660 34.146 1.39e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04934 - - mtr:25490768 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g04934 3 61699279 61702056 Mepo3g04934 3 61699279 61702056 ECH