Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04896 ATGCAACCCAAGTCCGAAACTGCAAATCAACCGAGGTCAGATCCTCATTCCTTTCAGCCCGGTGGTGCTTATTCTGAACCTTGGTGGCGTGGTGTTGGATACAATCCTGTAGCGCAAACAATGTCTGTTGCCAATTCATCCTCTCTTGATTGTCCTAATGGTGATTCAGAATCCAATGAGGAAGGCCAGTCTTTGTCCAATAGTGAGATGAATGAGGAAGATGATGATGCTGCTAAGGATTCACAGCCTGCTGCTCCCAATCAATCAGGAAATTATGGACAAGAACAAGGAATGCAGAATACTGCATCATCTGCATGTGCTACAAATCCTTATCAGGATCCATATTATGGGGGCATGATGGCAGCTTATCCTCACCAGCCGTTGGGATATCCTCCTTTTATAGGAGTGCCTCATGCCAGAATGCCTCTGCCCCTTGAGATGGCCCAAGAACCTGTTTATGTGAACGCCAAACAATACCAAGGAATTCTGAGGCGAAGACAAGCTCGTGCTAAAGCAGAGCTTGAAAGGAAGCTCATAAAATCTCGAAAGCCATATCTTCATGAATCTAGACATCAGCATGCTTTGAGAAGGGCAAGAGGCACCGGAGGACGATTTGCAAAGAAAACTGATGGTGAGGCCTCGGGAAAGGATAATGGCTCTGGTCCAGTCTTGTCGTCGCAATCAATTAGTTCATCTGGTTCAGAACTTTTGCCTTCAGACTCTGCGGAAACCTGGAATTCTCCCAACATGCGACAAGATGCAAGAGGATCAAACGAAAATGGTGGTGGCTCCTACCATAATAACAACAATGGTATGCAATCTTCAAGGTATCAGGGTGAAAGAGTGGAAGAAGGGGACTGTTCAGGGCAGCTACGTGGAAGCATCTCCTCGAACGAGGCATCGCAGAGGCGTCTTGCTATTCAGTAG 927 0.4682 MQPKSETANQPRSDPHSFQPGGAYSEPWWRGVGYNPVAQTMSVANSSSLDCPNGDSESNEEGQSLSNSEMNEEDDDAAKDSQPAAPNQSGNYGQEQGMQNTASSACATNPYQDPYYGGMMAAYPHQPLGYPPFIGVPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHALRRARGTGGRFAKKTDGEASGKDNGSGPVLSSQSISSSGSELLPSDSAETWNSPNMRQDARGSNENGGGSYHNNNNGMQSSRYQGERVEEGDCSGQLRGSISSNEASQRRLAIQ 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04896 308 MobiDBLite consensus disorder prediction 183 308 - -
Mepo3g04896 308 MobiDBLite consensus disorder prediction 43 105 - -
Mepo3g04896 308 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 150 205 IPR001289 GO:0003700|GO:0006355
Mepo3g04896 308 Gene3D - 148 210 - -
Mepo3g04896 308 ProSitePatterns NF-YA/HAP2 subunit signature. 153 173 IPR018362 GO:0003677|GO:0016602
Mepo3g04896 308 MobiDBLite consensus disorder prediction 82 105 - -
Mepo3g04896 308 MobiDBLite consensus disorder prediction 1 31 - -
Mepo3g04896 308 PRINTS CCAAT-binding transcription factor subunit B signature 151 173 IPR001289 GO:0003700|GO:0006355
Mepo3g04896 308 PRINTS CCAAT-binding transcription factor subunit B signature 182 205 IPR001289 GO:0003700|GO:0006355
Mepo3g04896 308 ProSiteProfiles NF-YA/HAP2 family profile. 148 208 IPR001289 GO:0003700|GO:0006355
Mepo3g04896 308 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 41 260 IPR001289 GO:0003700|GO:0006355
Mepo3g04896 308 MobiDBLite consensus disorder prediction 1 16 - -
Mepo3g04896 308 MobiDBLite consensus disorder prediction 43 66 - -
Mepo3g04896 308 MobiDBLite consensus disorder prediction 219 277 - -
Mepo3g04896 308 MobiDBLite consensus disorder prediction 290 308 - -
Mepo3g04896 308 MobiDBLite consensus disorder prediction 183 202 - -
Mepo3g04896 308 SMART cbf3 147 208 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04896 Mepo-Chr3 61047089 61050931 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04896 16 247 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.969 1.03e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Mepo3g04896 CBFB_NFYA 4.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04896 K08064 - gmx:100808378 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g04896 3 61047089 61050931 Mepo3g04896 3 61047089 61050931 ECH