Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04887 ATGGGTCGTATTCCATGCTGCGAGAAGGAGAATGTGAAAAGAGGTCAGTGGACACCTGAGGAAGACAACAAGCTCTCCTCTTACATTTCTCAACATGGCACTCGCAACTGGCGCCTCATTCCCAAGAATGCTGGTCTTCAGAGATGTGGAAAGAGCTGCAGGCTAAGGTGGACTAATTACCTTCGCCCTGATCTGAAACATGGCCATTTCTCGGATGGAGAAGAGCAAACAATTGTGAAGCTTCATTCGGTTTTTGGTAACAGATGGTCTCTGATAGCAGCGCAGCTGCCAGGACGCACCGACAATGATGTCAAAAATCATTGGAACACCAAGCTGAAAAAGAAACTGTCAGGCATGGGTATAGACCCTGTCACTCACAAGCCATTCTCCCATTTAATGGCTGAAATTGCTACAACATTGGCACCGCCACAGGCAGCTCACCTAGCTGAAGCAGCCCTTGGTTGTTTCAAAGATGAGGTGCTCCACCTTCTTACCAGGAAGCCAATTAACTACCAGGGCCAACATTCTAATGAAGCTCTGGGGAATAACATCACCAATTACTTTAACTGTAAGCCAGAAGAAAAAGAAGATGCTGTTGAGAAGATTAAGTTTGACCTATCTAAGGCCATACAACAAGAACACGAAATGGTACCCACAAATAAACCTTGGGACACCATTGCAGCAACATCTGCAAGTTTTGCAATGCCATACAATGTATACCCTACAATGTCTGGGTTTCAATTCAGCCCATCATGTTTTGGCAATAAAGGGGATGCATCACCATGGAGCCAAAGTTTATGTACTGGAAGCACATGCACAGCCATGGATCAGCAAAGCCAGTTTCATGAAAAACTTGAAGAGGAAAATGGGGATGATTCTGAGGCAACAAAAGAAATTAGAAATCTATCCAATATATTCAACTCAGACTGTGTCGTGTGGGATTTACCAGCCGATGATTTAATGAACCCTATGGTATAA 978 0.4427 MGRIPCCEKENVKRGQWTPEEDNKLSSYISQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGHFSDGEEQTIVKLHSVFGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLAPPQAAHLAEAALGCFKDEVLHLLTRKPINYQGQHSNEALGNNITNYFNCKPEEKEDAVEKIKFDLSKAIQQEHEMVPTNKPWDTIAATSASFAMPYNVYPTMSGFQFSPSCFGNKGDASPWSQSLCTGSTCTAMDQQSQFHEKLEEENGDDSEATKEIRNLSNIFNSDCVVWDLPADDLMNPMV 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04887 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mepo3g04887 325 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Mepo3g04887 325 Gene3D - 14 66 - -
Mepo3g04887 325 FunFam Transcription factor RAX3 7 67 - -
Mepo3g04887 325 CDD SANT 17 61 IPR001005 -
Mepo3g04887 325 CDD SANT 70 112 IPR001005 -
Mepo3g04887 325 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mepo3g04887 325 PANTHER F14D16.11-RELATED 1 324 - -
Mepo3g04887 325 SMART sant 13 63 IPR001005 -
Mepo3g04887 325 SMART sant 66 114 IPR001005 -
Mepo3g04887 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Mepo3g04887 325 Gene3D - 68 128 - -
Mepo3g04887 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mepo3g04887 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mepo3g04887 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Mepo3g04887 325 FunFam transcription factor MYB80 69 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04887 Mepo-Chr3 60975872 60977045 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04887 1 325 MYB Transcription Factor Family AT5G56110 55.891 3.07e-118 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo3g04887 Myb_DNA-binding 3.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04887 K09422 - gmx:100800764 593.193