Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04880 ATGGCTAGAAGAAACTCTACTCTCCCCATCCGTTTCTTCAAAATCATCCTCCAAACTAATCTTCATAGGATTCAAATACCAAATAAGTTTACTAGGAGACATGGAGTTGGTCTATCTAATCCGGTGTTGATCAAGCTTCCTGATGGCACTGGATGGAAAATTTATTGGAAAAAAATCAATGGTGAGATTTGGTTTGAAAAGGATTGGAAAACTTTTACTGAAAATTACTCTCTTGGATATGGCTCTTTGGTGGTGTTTGAATATAAAGGAACTTCCAAGTTTGATGTACACATATTTGACCAGAATGCAGTAGAAATAGATTATTCTTTAAGTGACACTGAGGATGAAAATGACAACGTTGATCATAGTGATGATCATGAATCAGTTGAGATTTTGGATGAATGGCTTAATCAGAAGAAGGCTAGACGAAGGTCACCTTTAGTTTCTCCTCGACTACATAAGAAAGTTAGAGGTGAGATTAAGAAGACTGCTAAAAGAACTTCATCAATGAATCGGCCAAAGGATGCTAGAGCTCAGGAAGTAGCTCAAAATTTCATCTCATGCAATCCTTTTTTCACAGTTCTCATAAACCCGAATAATATGTCAGAAAATCAACTGTCTGTACCAGATTTTAAAGGGGTTATTGAGAACAAGGACAAGAATGTGATGATGCAGATTGGGAAAAGGTCATGGACTGTGAAATTACTCCGTTGTTACGAGGGAAAATATTGTCGTTTCCTTTCCGCCGGTTGGTCGTTGTTTGTACGTGAAAGTGGACTGCAATCAGGAGATGTTTGTGTCTTTGAACTGATAAACAAGAAAGATTTGGTTTTTAAAGCTCATGTTTTCTAA 852 0.3709 MARRNSTLPIRFFKIILQTNLHRIQIPNKFTRRHGVGLSNPVLIKLPDGTGWKIYWKKINGEIWFEKDWKTFTENYSLGYGSLVVFEYKGTSKFDVHIFDQNAVEIDYSLSDTEDENDNVDHSDDHESVEILDEWLNQKKARRRSPLVSPRLHKKVRGEIKKTAKRTSSMNRPKDARAQEVAQNFISCNPFFTVLINPNNMSENQLSVPDFKGVIENKDKNVMMQIGKRSWTVKLLRCYEGKYCRFLSAGWSLFVRESGLQSGDVCVFELINKKDLVFKAHVF 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04880 283 CDD B3_DNA 191 283 IPR003340 GO:0003677
Mepo3g04880 283 CDD B3_DNA 11 100 IPR003340 GO:0003677
Mepo3g04880 283 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Mepo3g04880 283 PANTHER B3 DOMAIN-CONTAINING 10 278 - -
Mepo3g04880 283 Pfam B3 DNA binding domain 191 279 IPR003340 GO:0003677
Mepo3g04880 283 Pfam B3 DNA binding domain 19 101 IPR003340 GO:0003677
Mepo3g04880 283 SUPERFAMILY DNA-binding pseudobarrel domain 11 102 IPR015300 -
Mepo3g04880 283 Gene3D - 7 104 IPR015300 -
Mepo3g04880 283 ProSiteProfiles B3 DNA-binding domain profile. 191 283 IPR003340 GO:0003677
Mepo3g04880 283 Gene3D - 170 283 IPR015300 -
Mepo3g04880 283 SMART B3_2 12 102 IPR003340 GO:0003677
Mepo3g04880 283 SMART B3_2 191 281 IPR003340 GO:0003677
Mepo3g04880 283 SUPERFAMILY DNA-binding pseudobarrel domain 188 283 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04880 Mepo-Chr3 60902446 60903917 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04880 8 283 B3 DNA Binding Superfamily AT3G18990 26.686 2.36e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo3g04880 B3 8.2e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04880 - - tpra:123887513 380.563