Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04879 ATGTTTATATTTGACACCTTTTTCTTAGTGACCAAAGGGGTTCTTTCATTTTTACAGCAAATACCAAATAAGTTTACAAGGAGACATGGAGTTCATCTATCAAATCCAGTGTTGATCAAGGCTCCTAATGGCACTAAATGGAAAGTTTATTGGAAAAAAATCAATGGTGAGATTTGGTTTGGAAAGGGGTGGAAAACTTTTACTGAAAATTACTCTCTTGGACATGGCTGCTTGGTGGTGTTTGAATATGAAGGAACTTCCAAGTTTGATGTACACATACTTGGCCAGAATGCTGTGGAAATAGATTATGATTCTTCATGTGACACTGATGATGAAAAAGACAATGTTGATCATAGTGATGATGAATCACTTGAGATTTTAGATGAATGGCTTAATCGGAAAAAGGCTAGACAAAGATTACCTTTTGTTTCTCCTCGACCACATAAGAAAGTTAGAGGTGATCATGAGAAGACTACTAAAAGAACTTCATCAATAAATTGGCCAAAGGATGTTAGAGCTCAGCAAGTAGCTCAAAATTTCATCTCATGCAATCCTTTTTTCACGACTCTCATAAAACCTCACCATACAGTAGATAGTAGGCTGTATGTAAATGCAGATTTAAAAAAAGTTATTGAGAACAAAGAGAAGTATGTGATTCTTCAGATTGGGAAAAGAACATGGAATGTGAAAATGATCTGTTCTAACAAGGCTAAATATGGAGGCTACCTATCGGCGGGTTGGTCCTTTTTTGCAAGCGAAAGTGAACTGCTACCAGGAGATGTTTGTGTCTTTGAACTGATAAACAAGAAAGATTTAGTTTTTAAAGTTCATGTCTTCAAAAGGGACAATTAA 852 0.3568 MFIFDTFFLVTKGVLSFLQQIPNKFTRRHGVHLSNPVLIKAPNGTKWKVYWKKINGEIWFGKGWKTFTENYSLGHGCLVVFEYEGTSKFDVHILGQNAVEIDYDSSCDTDDEKDNVDHSDDESLEILDEWLNRKKARQRLPFVSPRPHKKVRGDHEKTTKRTSSINWPKDVRAQQVAQNFISCNPFFTTLIKPHHTVDSRLYVNADLKKVIENKEKYVILQIGKRTWNVKMICSNKAKYGGYLSAGWSFFASESELLPGDVCVFELINKKDLVFKVHVFKRDN 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04879 283 ProSiteProfiles B3 DNA-binding domain profile. 4 97 IPR003340 GO:0003677
Mepo3g04879 283 PANTHER B3 DOMAIN-CONTAINING 12 278 - -
Mepo3g04879 283 CDD B3_DNA 186 280 IPR003340 GO:0003677
Mepo3g04879 283 ProSiteProfiles B3 DNA-binding domain profile. 186 282 IPR003340 GO:0003677
Mepo3g04879 283 CDD B3_DNA 21 94 IPR003340 GO:0003677
Mepo3g04879 283 Gene3D - 5 98 IPR015300 -
Mepo3g04879 283 SMART B3_2 186 282 IPR003340 GO:0003677
Mepo3g04879 283 SMART B3_2 7 97 IPR003340 GO:0003677
Mepo3g04879 283 Pfam B3 DNA binding domain 20 93 IPR003340 GO:0003677
Mepo3g04879 283 Pfam B3 DNA binding domain 186 281 IPR003340 GO:0003677
Mepo3g04879 283 SUPERFAMILY DNA-binding pseudobarrel domain 183 282 IPR015300 -
Mepo3g04879 283 MobiDBLite consensus disorder prediction 145 165 - -
Mepo3g04879 283 Gene3D - 168 283 IPR015300 -
Mepo3g04879 283 SUPERFAMILY DNA-binding pseudobarrel domain 9 97 IPR015300 -
Mepo3g04879 283 MobiDBLite consensus disorder prediction 147 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04879 Mepo-Chr3 60894190 60895972 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04879 20 280 B3 DNA Binding Superfamily AT3G18990 25.000 9.27e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo3g04879 B3 7.6e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04879 - - tpra:123887513 333.569