Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04878 ATGGCCAGAAGAAATTCTACTCTCCCCATCCGTTTCTTCAAGATCATCCTTCAAACTAATCTTCAAAGGATCCAAATACCAAATAAGTTTACTAGGAGACATGGAGTTGGTCTATCTAATCCGGTGTTGATCAACCTTCCTGATGGCACTGGATGGAAAATTTATTGGAAAAAAATCAATGGAGAGATTTGGTTTGAAAAGGGTTGGAAAACTTTTACTGAAAATTACTCTCTTGGACATGGCTCTTTGGTTGTGTTTGAATATAAAGGAACTTCCAAGTTTGATGTACACATATTTGACCAGAATGCAGTAGAAATAGATTATTCTTTAAGTGACACTGAGGATGAAAATGACAACGTTGATCATAGTGATGATGATGAATCAGTTGAGATTTTGGATGAATGGCTTAATCGGAAGAAGGCTTCAAAAAGATCACCTTCTGTTTCTCCTCGACCACGTAAGAAAAAGACTGCTAAAAGAACTTCATCAATAAATTGGCCAAAGGATGCTAGAGCTCAGGAAGTAGCTCAAAATTTCATCTCATGCAATCCCTTTTTCACAATTCTCATAACCCCACTTAATCTGTTAGGAAATTATCTGTTTGTACCAGATTTAAAAGGGGTTATTGAGAACAAGGACAAGAATGTGATACTGCAGACTGGGAAAAAGTCATGGAATGTGAAATTACTTCGTTGTTATGAGGGCAAAAATGTTCGTCGCCTTTCTGCGGGCTGGCACTTGTTTTTAAGTGGAAGTGGACTGAAATCAGGAGATGTCTGTGTCTTTGAACTGATAAACAAGAAAGAATTGGTTTTTAAAGTTCATGTTTTCTAA 834 0.3693 MARRNSTLPIRFFKIILQTNLQRIQIPNKFTRRHGVGLSNPVLINLPDGTGWKIYWKKINGEIWFEKGWKTFTENYSLGHGSLVVFEYKGTSKFDVHIFDQNAVEIDYSLSDTEDENDNVDHSDDDESVEILDEWLNRKKASKRSPSVSPRPRKKKTAKRTSSINWPKDARAQEVAQNFISCNPFFTILITPLNLLGNYLFVPDLKGVIENKDKNVILQTGKKSWNVKLLRCYEGKNVRRLSAGWHLFLSGSGLKSGDVCVFELINKKELVFKVHVF 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04878 277 Gene3D - 7 104 IPR015300 -
Mepo3g04878 277 ProSiteProfiles B3 DNA-binding domain profile. 185 277 IPR003340 GO:0003677
Mepo3g04878 277 SUPERFAMILY DNA-binding pseudobarrel domain 11 102 IPR015300 -
Mepo3g04878 277 Gene3D - 166 277 IPR015300 -
Mepo3g04878 277 SUPERFAMILY DNA-binding pseudobarrel domain 182 277 IPR015300 -
Mepo3g04878 277 MobiDBLite consensus disorder prediction 140 163 - -
Mepo3g04878 277 PANTHER B3 DOMAIN-CONTAINING 10 276 - -
Mepo3g04878 277 Pfam B3 DNA binding domain 19 101 IPR003340 GO:0003677
Mepo3g04878 277 Pfam B3 DNA binding domain 188 276 IPR003340 GO:0003677
Mepo3g04878 277 CDD B3_DNA 11 100 IPR003340 GO:0003677
Mepo3g04878 277 CDD B3_DNA 209 277 IPR003340 GO:0003677
Mepo3g04878 277 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Mepo3g04878 277 SMART B3_2 185 275 IPR003340 GO:0003677
Mepo3g04878 277 SMART B3_2 12 102 IPR003340 GO:0003677
Mepo3g04878 277 MobiDBLite consensus disorder prediction 144 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04878 Mepo-Chr3 60881121 60882515 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04878 8 277 B3 DNA Binding Superfamily AT3G18990 27.811 4.50e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo3g04878 B3 8.3e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04878 - - tpra:123887513 352.829