Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04877 ATGGCTAGAGGAAATACTATCCAGCCATTACGTTTCTTCAAGAAAGTTAGAGGTGAGATTAAGAAGACTACTGAAAGAACTACATCATTGAATTGGCCTATGGGAGCTAGAGCTCGAGAAGTAGCTGCAAAATTCATCTCAAATAATCCTTTTTTCACAATTCTCATAAAGCCTAATCATCTGGTAGAAACTCGGCTGTGTGTACCAAATTTAGAAGGGGTTATTGAGAACAAAGAGAAGTATGTGGTTCTGCAGATTGGGAAAAGATCATGGACTGTGAAATTGCTCCGTTATTACAAGGCTAAAAATGGTCGCCACCTATCAGCGGGTTGGTCCTTGTTTGCAAATGAAAGTGGACTGCGATCGGGAGATGTTTGTGTCTTTGAACTGATCAACAAGAAATATTTAGTTTTTAAAATTCATGTTTTATAA 432 0.3796 MARGNTIQPLRFFKKVRGEIKKTTERTTSLNWPMGARAREVAAKFISNNPFFTILIKPNHLVETRLCVPNLEGVIENKEKYVVLQIGKRSWTVKLLRYYKAKNGRHLSAGWSLFANESGLRSGDVCVFELINKKYLVFKIHVL 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04877 143 SUPERFAMILY DNA-binding pseudobarrel domain 47 141 IPR015300 -
Mepo3g04877 143 Pfam B3 DNA binding domain 51 140 IPR003340 GO:0003677
Mepo3g04877 143 CDD B3_DNA 51 143 IPR003340 GO:0003677
Mepo3g04877 143 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 34 142 IPR044837 -
Mepo3g04877 143 SMART B3_2 51 140 IPR003340 GO:0003677
Mepo3g04877 143 Gene3D - 34 143 IPR015300 -
Mepo3g04877 143 ProSiteProfiles B3 DNA-binding domain profile. 51 143 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04877 Mepo-Chr3 60879401 60880050 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04877 37 143 REM Transcription Factor Family AT1G49480 32.143 1.16e-12 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo3g04877 B3 1.3e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04877 - - tpra:123894455 167.548