Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04876 ATGGTCATTAACTTCATTACAGCAATCAAACATCTCTTATCTCCACTTCAAACTCCATCATCCATGGCTAGGAGGAGAAATGCTACATTTCCCATCCATTTTTTCAAGATCATCCTCCAATCTAATCTTCAAAGGCTGAAAATACCAAATAAGTTTACAAGGAGATATGGAGTTGGTCTATCAAATCCAGTGTTGATCAAGGCTCCTGATGGCACTAAATGGAAAGTTTATTGGAAAAAAATCAATAATGAGATTTGGTTCGAGAAGGGTTGGAATATTTTTACTGGAAATTACTCTCTAGAACAAGGGTGTTTGGTGGTGTTTAAATATAGAGGAACTTCCAAGTTTGATGTACTAATACTTGGCCAGAATGCAATAGAAATAGACTATGATTATTCAAGTGACACTGATGATCAAATTGACAATGTTGTTCAAAGTGACGATGAATCACGTGAGATTTTAGATGAATGCAAAAATCAGAAGAGTACTAGAAAAAGGTCACCATTATTTTATCCTCGACCACATAAGAAAGTTAGCGGTGATGTTAAGAAGACTACAAAAAGCTTGAATCGGTCAAATAAATCTAGAGCTCAGGAAGTAGCTACAAAATTCATCTCAAGCAATCTTTTTTTCACAATTCTTATACAACCTAATCATCTGTTAGCAAGTCGGCCGCGTGTACCAAATATACATTTAAAAGGGGTTATTGAGAACAAGGAGAAGAATCTGGTACTTCAGATTGGAGAAAGATCATGGAAAGTGAAATTGCTCCCTTCTTACGAGCGTGATACGGGTCGTCGCCTTTCGGCCGGTTGGTCCTTGTTTGCAAGTGAAAGTGGACTGCAAGCTGAAGATGTTTGTGTCTTTGAACTGATAAACAAGGAAGATTTAGTTTTTAAAGTTCATGTTTTCTAA 915 0.3661 MVINFITAIKHLLSPLQTPSSMARRRNATFPIHFFKIILQSNLQRLKIPNKFTRRYGVGLSNPVLIKAPDGTKWKVYWKKINNEIWFEKGWNIFTGNYSLEQGCLVVFKYRGTSKFDVLILGQNAIEIDYDYSSDTDDQIDNVVQSDDESREILDECKNQKSTRKRSPLFYPRPHKKVSGDVKKTTKSLNRSNKSRAQEVATKFISSNLFFTILIQPNHLLASRPRVPNIHLKGVIENKEKNLVLQIGERSWKVKLLPSYERDTGRRLSAGWSLFASESGLQAEDVCVFELINKEDLVFKVHVF 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04876 304 Pfam B3 DNA binding domain 210 304 IPR003340 GO:0003677
Mepo3g04876 304 Pfam B3 DNA binding domain 41 118 IPR003340 GO:0003677
Mepo3g04876 304 SUPERFAMILY DNA-binding pseudobarrel domain 206 304 IPR015300 -
Mepo3g04876 304 SMART B3_2 210 302 IPR003340 GO:0003677
Mepo3g04876 304 SMART B3_2 34 124 IPR003340 GO:0003677
Mepo3g04876 304 Gene3D - 189 304 IPR015300 -
Mepo3g04876 304 PANTHER B3 DOMAIN-CONTAINING 29 302 - -
Mepo3g04876 304 CDD B3_DNA 209 304 IPR003340 GO:0003677
Mepo3g04876 304 SUPERFAMILY DNA-binding pseudobarrel domain 32 131 IPR015300 -
Mepo3g04876 304 ProSiteProfiles B3 DNA-binding domain profile. 210 304 IPR003340 GO:0003677
Mepo3g04876 304 CDD B3_DNA 33 121 IPR003340 GO:0003677
Mepo3g04876 304 Gene3D - 28 125 IPR015300 -
Mepo3g04876 304 ProSiteProfiles B3 DNA-binding domain profile. 31 124 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04876 Mepo-Chr3 60873516 60875506 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04876 34 304 B3 DNA Binding Superfamily AT3G18990 26.347 1.57e-28 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo3g04876 B3 1.4e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04876 - - tpra:123887513 347.821