Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04875 ATGCTCATTAACTTCATTACAACAATCAAACATCTCTTATCTCCACTTCAAACTCCATCATCCATGGCTAGGAGGAGAAATGCTACATTTCCCATCCATTTTTTTAAGATCATCCTCCAATCTAATCTTCAAAGACTTAAAATACCAAATGAGTTTACAAGGAAACATGGAGATAATCTATCAAATCCAGTGTTGATCAAGCCCCCTGATGGCACTAAATGGAAAGTTTATTGGAAAAAAATCAATGGAACTTCCAAGTTTGATGTAGTAATACTTGGCCAGAATGCAGTAGAAATAGACTATGATATTTCATGTGACACTGATGATGAAAATGACAATGTTGGTCATAGTGATGATGAATCACTTGAGATTTTAGATGAATGGCCAAATCAGAAGAGTACTAGAAAAAGGTCGCCATTATTTTCTCCTCGACCACATAAGAAAGTAAGAGGTATTGAAAGAACTACATCATGGAATTGGCCAAAGGGAGCTAGAGCTCAGGAAATAGCTTTAAAATTCATCTCAAGCAATCCTTTTTTCACAATTCTCATAAACCCTACTCATCTAGTAGAAAATCGGGTGTGTGTTCCAACTTTAAACGGGGTTATTGAGAACAAAGAAAAGTATGTCATGTTGCAGATTGGGAAAAGATCATGGAATCTGAAATTGCTCCCTTTTTGCGAGGCTAGAAATGTTCGACGCCTCTCGGCCGGTTGGTCCTTGTTTGCAAGAGAAAGTGGTCTGCAACCAGGAGATGTTTGTGTCTTTGAACTGATAAACAAGAGAGATTTGGTTTTTAATGTTCATATTACCAAAAGTGACACTTAA 828 0.3696 MLINFITTIKHLLSPLQTPSSMARRRNATFPIHFFKIILQSNLQRLKIPNEFTRKHGDNLSNPVLIKPPDGTKWKVYWKKINGTSKFDVVILGQNAVEIDYDISCDTDDENDNVGHSDDESLEILDEWPNQKSTRKRSPLFSPRPHKKVRGIERTTSWNWPKGARAQEIALKFISSNPFFTILINPTHLVENRVCVPTLNGVIENKEKYVMLQIGKRSWNLKLLPFCEARNVRRLSAGWSLFARESGLQPGDVCVFELINKRDLVFNVHITKSDT 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04875 275 SMART B3_2 34 120 IPR003340 GO:0003677
Mepo3g04875 275 SMART B3_2 179 274 IPR003340 GO:0003677
Mepo3g04875 275 CDD B3_DNA 33 87 IPR003340 GO:0003677
Mepo3g04875 275 SUPERFAMILY DNA-binding pseudobarrel domain 175 273 IPR015300 -
Mepo3g04875 275 SUPERFAMILY DNA-binding pseudobarrel domain 32 89 IPR015300 -
Mepo3g04875 275 Gene3D - 28 95 IPR015300 -
Mepo3g04875 275 ProSiteProfiles B3 DNA-binding domain profile. 179 274 IPR003340 GO:0003677
Mepo3g04875 275 PANTHER B3 DOMAIN-CONTAINING 83 266 - -
Mepo3g04875 275 Pfam B3 DNA binding domain 179 271 IPR003340 GO:0003677
Mepo3g04875 275 Gene3D - 162 274 IPR015300 -
Mepo3g04875 275 CDD B3_DNA 179 272 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04875 Mepo-Chr3 60864249 60866409 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04875 165 268 REM Transcription Factor Family AT1G49480 33.028 5.19e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo3g04875 B3 2.3e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04875 - - tpra:123887513 323.553