Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04848 ATGGTTTCATTTTCTTCAAATTATGCAATAGGAGAAAACAGCATGGCTAGTAGTATCCAAACCATGCCTCAACCAACTACCTTATCTCAAGATCAACCTTCATTTTTGACTAGAATGGCCATGAGAATATCAAGATCAAGATGTTTCAATTTTTTGAGAAGAGTGTTTCATTACCAAAATGGACCAAGATCTGATCTTGGTTCTAATCCTTTTAATTCTAGTACTTGGATGATGTGTGAGTTGATTGCTTTGTTGATTCAGATAACAAGCACAACATTTACTTTGGCAATTTCAAAGAGTGAGAAACCTGTTTGGCCTATGAGGGTGTGGATAGTTGGTTATGATATTGGATGTGTTCTTAATTTGTTGTTACTTTATGGAAGATATCATCAAATTAATGGGACTAATGGAGATGCTCTTGGCCTTTCTGATTTGGAACAACAAACAAACAATGAAGAAAACAGTGTATACAGGAGCACACATTTGATGAGCAAATGCAGAAGTTCACTAGAGCTTTTCTTTGCAATATGGTTTGTGATGGGAAATGTTTGGTCCTTTGACTCACGTTTTGGAACATTACAACAAGCTCCAAAACTCCAAGTTCTCTGCATCATTCTTCTTGTTTGGAATGCAATTTGCTACTCTTTCCCTTTTCTACTGTTTTTGTTGCTTTGTTGTGTTGTGCCACTCATTAGCACCCTCCTTGGTTACAACATGAACATTGGATCCTCTTCTAAAGGTGCATCTGATGATCAAATCTCACAACTTCCATCTTGGAGATTTAAAGTGGCTCATACCAAAGTAGATGTTAACAATGATTCTCAATGTAGTGAAAGATTGATCACCGAAGAGCCGGAATGTTGCATATGCTTGGCCAAATACAAAGACAAAGAAGAAGTTAGGCAATTGCCTTGTTCCCATATGTTCCATCTAAAATGTGTTGATCAATGGCTAAGAATTATATCATGTTGCCCTCTTTGTAAACAAGGACTACAAAGGTAG 1002 0.3683 MVSFSSNYAIGENSMASSIQTMPQPTTLSQDQPSFLTRMAMRISRSRCFNFLRRVFHYQNGPRSDLGSNPFNSSTWMMCELIALLIQITSTTFTLAISKSEKPVWPMRVWIVGYDIGCVLNLLLLYGRYHQINGTNGDALGLSDLEQQTNNEENSVYRSTHLMSKCRSSLELFFAIWFVMGNVWSFDSRFGTLQQAPKLQVLCIILLVWNAICYSFPFLLFLLLCCVVPLISTLLGYNMNIGSSSKGASDDQISQLPSWRFKVAHTKVDVNNDSQCSERLITEEPECCICLAKYKDKEEVRQLPCSHMFHLKCVDQWLRIISCCPLCKQGLQR 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04848 333 Coils Coil 331 333 - -
Mepo3g04848 333 SUPERFAMILY RING/U-box 278 331 - -
Mepo3g04848 333 SMART ring_2 287 327 IPR001841 -
Mepo3g04848 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 332 IPR013083 -
Mepo3g04848 333 ProSiteProfiles Zinc finger RING-type profile. 287 328 IPR001841 -
Mepo3g04848 333 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 16 331 - -
Mepo3g04848 333 Pfam RING-like zinc finger 286 314 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04848 Mepo-Chr3 60620743 60623823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04848 35 331 C3H Transcription Factor Family AT4G26580 68.350 4.63e-144 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04848 - - gmx:100818715 541.191