Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04828 ATGCCGCATCACAAGGATGGGCGGTTTAAACGCTTCAAGCGAAGTCCTGGTTCAACATCTTTACGTAGATGTCAACATTGTGGAGTCGACGAAAATAACACTTCTCAAATGCGTCCCGGGCCAGCTGGAAGAAGTACTCTATGTAATACATGCGGCATGACGTGGGCCAAAAAGGGGATACTTAGAGATCTCAGTAAGAGACGAAGAACTCATTCTGTTGATCAAAGTGGTCTGGGTATTTCTGAAGACCCTTCCAAGTTCATTGTTGCCGAAGGTTCGAGCAATCATGCATTAAACCCCATTGAAGAGGAATTGGCTGAATCTTCAGAACACCCAACAAACACTCTACCATTAGGAATTGATCATTCTTCAGAAAATGATGATGGACAGAGTATTTCCGAAGATCCTTCCAAGGCCACAACTACTGAAGGTTCGAATTATCATGCATTGAACCCTATTGAAAAGCCGATGAAGAGATACTCGTTTTCAGAGTTTGTGGCGACGGCAGAGTCGTTTTTGGCATTTCTCGACGAGGACTTGCCATCTTTCTTGGAGGTAGACCACACCTCAGATAGAGTTGCCGCCGCTTGA 591 0.4501 MPHHKDGRFKRFKRSPGSTSLRRCQHCGVDENNTSQMRPGPAGRSTLCNTCGMTWAKKGILRDLSKRRRTHSVDQSGLGISEDPSKFIVAEGSSNHALNPIEEELAESSEHPTNTLPLGIDHSSENDDGQSISEDPSKATTTEGSNYHALNPIEKPMKRYSFSEFVATAESFLAFLDEDLPSFLEVDHTSDRVAAA 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04828 196 PANTHER GATA TRANSCRIPTION FACTOR 28 18 142 IPR045280 GO:0006355
Mepo3g04828 196 SMART GATA_3 18 71 IPR000679 GO:0006355|GO:0043565
Mepo3g04828 196 Gene3D - 18 75 IPR013088 GO:0006355|GO:0008270
Mepo3g04828 196 MobiDBLite consensus disorder prediction 110 126 - -
Mepo3g04828 196 Pfam GATA zinc finger 24 59 IPR000679 GO:0006355|GO:0043565
Mepo3g04828 196 MobiDBLite consensus disorder prediction 105 150 - -
Mepo3g04828 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 20 70 - -
Mepo3g04828 196 CDD ZnF_GATA 23 68 IPR000679 GO:0006355|GO:0043565
Mepo3g04828 196 MobiDBLite consensus disorder prediction 133 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04828 Mepo-Chr3 60367984 60374017 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04828 24 66 Tify Gene Family AT1G51600 62.791 3.38e-14 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mepo3g04828 GATA 1.3e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04828 - - tpra:123912898 157.532