Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04822 ATGTTGCATCAAATTGGTGCCTCTGCAGATACAAGAGTTCCAACAAGTATAATGAATCCAAGAAATGATGCCCTTGTGCCCCAACTAGCAATTCGAGACAAAAATACCTTGCCAATAAAAAATGTGGTAACAATCATGAGAAAAGTTCTTCCACCAAACACAAAAATATCTCGTGGAGCAAAGGAGATGGTTGAACAAATCACCTCAAAGTTCATAAGATATATAACCAAAAAAGCCATTGAACGTTGTCACAGGGAATGCAGGAAAATTTTGGGTGCAGATGACCTATTAAGGGTCATGGAATCTATAGGTTATAATAACTATTATGAGTATCTCAATTTTTATCTCAAATGCTTTCGTTATAGTAATGAAATTGGATATTTGAAACTTGTTGGTGAGCTTCCTAAGCCCACCTTACCAGCTTTTCAGATTGCTTCTCCCACCTTACCACCACCACCACCCATTGCAATTGAGTCAGACTTTTCTTTGAACTCAAACTCATTTATTGATTTGGATGAAGCAGTGGGCATGGATGAGGTTTGGAATGAATTGGATCATTTGGGTGTTGGTTCCCTAGAGACTGCTTTAACAAACTTTGATCATTCAATTCAATTCAACTTTGACGATATCTTTCAAGAGATGGATGATAAAATGAATGATTAA 663 0.368 MLHQIGASADTRVPTSIMNPRNDALVPQLAIRDKNTLPIKNVVTIMRKVLPPNTKISRGAKEMVEQITSKFIRYITKKAIERCHRECRKILGADDLLRVMESIGYNNYYEYLNFYLKCFRYSNEIGYLKLVGELPKPTLPAFQIASPTLPPPPPIAIESDFSLNSNSFIDLDEAVGMDEVWNELDHLGVGSLETALTNFDHSIQFNFDDIFQEMDDKMND 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04822 220 Gene3D Histone, subunit A 30 125 IPR009072 GO:0046982
Mepo3g04822 220 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 34 121 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mepo3g04822 220 SUPERFAMILY Histone-fold 35 120 IPR009072 GO:0046982
Mepo3g04822 220 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 36 99 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04822 Mepo-Chr3 60288128 60288790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04822 37 120 CCAAT-HAP3 Transcription Factor Family AT4G14540 48.810 4.51e-23 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mepo3g04822 CBFD_NFYB_HMF 6e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04822 K08065 - tpra:123912904 136.732