Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04813 ATGGCGGACTCCGACAACGACTCCGGAGGACCACACGGCGGAGGATCAAACGCACACGGAAGCGAGATGTCACCACGAGAACAAGACCGATTCCTTCCAATAGCAAACGTAAGCAGGATCATGAAAAAAGCACTACCAGCGAACGCGAAGATCTCAAAAGACGCAAAGGAAACAGTTCAGGAGTGTGTTTCAGAGTTCATCAGCTTCATCACCGGCGAAGCCTCTGATAAGTGTCAACGTGAGAAGCGGAAGACGATCAACGGCGATGATTTGCTTTGGGCGATGACGACGCTGGGGTTCGAGGAGTATGTTGAGCCGTTGAAAGGTTATCTTCAGAGGTTTAGGGAGATGGAAGGTGAGAAGACAGTGGGAGCGCGTGATAAAGACGCGCCGCAAGGTTCTAATAGTGTTAATAATAATAGTTCTTATGAGAGTGGTGGTTATGGTGGTGTTATGATGCATCAGGGACACGTGTATGGTTCTGGTGGTGGTGGTGGGTTTCATCAAGTTATGGGTAAGGGTGGGCCTGGGTATCCTGGGCCTGGGTCTAATACCGGTAGGCCCAGATAG 570 0.5053 MADSDNDSGGPHGGGSNAHGSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKGYLQRFREMEGEKTVGARDKDAPQGSNSVNNNSSYESGGYGGVMMHQGHVYGSGGGGGFHQVMGKGGPGYPGPGSNTGRPR 189
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04813 189 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mepo3g04813 189 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Mepo3g04813 189 Gene3D Histone, subunit A 18 145 IPR009072 GO:0046982
Mepo3g04813 189 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 16 132 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mepo3g04813 189 MobiDBLite consensus disorder prediction 1 29 - -
Mepo3g04813 189 SUPERFAMILY Histone-fold 28 129 IPR009072 GO:0046982
Mepo3g04813 189 MobiDBLite consensus disorder prediction 162 189 - -
Mepo3g04813 189 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Mepo3g04813 189 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Mepo3g04813 189 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Mepo3g04813 189 MobiDBLite consensus disorder prediction 121 142 - -
Mepo3g04813 189 FunFam Nuclear transcription factor Y subunit B-3 20 144 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mepo3g04813 Mepo-Chr3 60201712 60203636 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04813 1 125 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.400 3.81e-73 216
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mepo3g04813 CBFD_NFYB_HMF 1.7e-27 CL0012
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04813 K08065 - gmx:100813169 261.151