Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04787 ATGGAAGTGGAGATGGAAAATTCAACATTGACTGAATCGTCTGTACCTGGTTCTGATGTTCAAGATCAAACCCCTCTAGTTTCGTCCCAGCCAACTCAACCACCGGTTATTACTCCTGTCTTGCCACCTCTGGCTCCAATTCCTACAGCTCCTTCCTCTCTTGTCCGACCTCTGGCACCGCTCCCAATCCGCCCACCGGTACCACAAAATGGTGAGGTTGGGTCTAGTGGTTCTGATTCAGACGATGATGATGATACAGACACCAGAATCAATAAGGGTACTGGGGAGTATGAGATATCAGAAGAGAGTAGACTGGTGAGGGAGCGGCAGGAGAAAGCCATGCAAGACCTTATGTTGAGGAGGCGAGCTGCTGCTCTTGCTGTTCCCACCAATGACATGGCAGTCAGGGCCCGTCTTCGCCATCTTGGTGAACCGATTACTCTCTTTGGTGAGAGGGAGATGGAGAGACGAGATAGGTTGCGGATGATTATGGCAAAGCTGGATGCTGATGGTCAGCTGGAAAAGCTAATGAAAGCTCTTGAGGATGAAGAGGCCGCAACTTCTGCTCCAAAAGATGAGGCTGAGGATGATCTGCAGTATCCTTTTTACACTGAAGGGTCAAAGTCTCTCCTTGATGCAAGGATTGATATTGCAAAATATTCTTTAGTAAAGGCCGCATTGCGTATTCAACGTGCCCAGAGAAGAAGAGAGGATCCGGATGAAGATGTGGATGCGGAGATAGATTGGACATTGAATCAGGCAGCGAATTTGAATCTTGAATTCAGTGAAATCGGAGATGATCGACCACTTACTGGTTGCTCGTTCTCCCGGGATGGAAAAGGGCTTGCTACCTGTTCTTTCACTGGAGCTACCAAGTTGTGGAGCATGCCTAATGTTAAAAAAGTTTCTACCTTGAAGGGGCACACCCAGCGTGCTACTGATGTTGCTTATTCTCCTGTGCACAAAAATCATTTAGCAACTGCCTCTGCTGACCGGACAGCAAAGTATTGGAATGATCAAGGAGCTCTTTTGGGAACATTTAAGGGTCATCTTGAACGTCTTGCACGCATTGCCTTCCATCCATCAGGGAAGTACTTGGGCACTGCTAGCTACGACAAGACATGGAGGTTATGGGATGTTGAAACAGAAGAGGAGTTGCTTCTTCAAGAAGGCCATAGTAGAAGTGTATATGGTTTGGATTTCCATCATGATGGATCGTTAGCCGCGTCTTGTGGACTGGACGCACTGGCTCGTGTATGGGACCTTCGAACTGGGAGAAGTGTTCTTGCACTAGAAGGTCATGTCAAATCGATTCTTGGCATCAGTTTTTCTCCCAATGGATATCATTTAGCCACCGGTGGTGAAGATAACACTTGTCGTATTTGGGACTTGAGGAAGAAGAAGTCCTTGTACACCATTCCCGCTCACTCTAATCTAATATCACAGGTCAAATTTGAGCCACACGAGGGTTACTTTTTGGTAACTGCCTCATATGACATGACGGCCAAGGTTTGGTCAGGCCGGGACTTTAAGCCTGTAAAGACACTATCAGGGCATGAAGCTAAAGTTACTTCTCTGGATGTTCTTGGAGATGGTGGGTATATTGTTACCGTCTCCCATGATCGCACCATAAAGCTGTGGTCCAGCGGCATTACTAGTGAGCATGCTATGGATGTTGACTAA 1683 0.4718 MEVEMENSTLTESSVPGSDVQDQTPLVSSQPTQPPVITPVLPPLAPIPTAPSSLVRPLAPLPIRPPVPQNGEVGSSGSDSDDDDDTDTRINKGTGEYEISEESRLVRERQEKAMQDLMLRRRAAALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLDADGQLEKLMKALEDEEAATSAPKDEAEDDLQYPFYTEGSKSLLDARIDIAKYSLVKAALRIQRAQRRREDPDEDVDAEIDWTLNQAANLNLEFSEIGDDRPLTGCSFSRDGKGLATCSFTGATKLWSMPNVKKVSTLKGHTQRATDVAYSPVHKNHLATASADRTAKYWNDQGALLGTFKGHLERLARIAFHPSGKYLGTASYDKTWRLWDVETEEELLLQEGHSRSVYGLDFHHDGSLAASCGLDALARVWDLRTGRSVLALEGHVKSILGISFSPNGYHLATGGEDNTCRIWDLRKKKSLYTIPAHSNLISQVKFEPHEGYFLVTASYDMTAKVWSGRDFKPVKTLSGHEAKVTSLDVLGDGGYIVTVSHDRTIKLWSSGITSEHAMDVD 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04787 560 Gene3D - 244 430 IPR015943 GO:0005515
Mepo3g04787 560 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 473 506 - -
Mepo3g04787 560 MobiDBLite consensus disorder prediction 1 34 - -
Mepo3g04787 560 SMART pr04_2 130 183 IPR014906 -
Mepo3g04787 560 ProSiteProfiles Trp-Asp (WD) repeats profile. 347 388 IPR001680 GO:0005515
Mepo3g04787 560 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 391 560 - -
Mepo3g04787 560 ProSiteProfiles Trp-Asp (WD) repeats profile. 389 430 IPR001680 GO:0005515
Mepo3g04787 560 CDD WD40 269 548 - -
Mepo3g04787 560 MobiDBLite consensus disorder prediction 1 102 - -
Mepo3g04787 560 Pfam pre-mRNA processing factor 4 (PRP4) like 135 161 IPR014906 -
Mepo3g04787 560 ProSitePatterns Trp-Asp (WD) repeats signature. 408 422 IPR019775 -
Mepo3g04787 560 Gene3D - 431 556 IPR015943 GO:0005515
Mepo3g04787 560 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 347 384 - -
Mepo3g04787 560 ProSitePatterns Trp-Asp (WD) repeats signature. 450 464 IPR019775 -
Mepo3g04787 560 SUPERFAMILY WD40 repeat-like 257 547 IPR036322 GO:0005515
Mepo3g04787 560 MobiDBLite consensus disorder prediction 35 67 - -
Mepo3g04787 560 Coils Coil 166 186 - -
Mepo3g04787 560 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 305 338 - -
Mepo3g04787 560 ProSiteProfiles Trp-Asp (WD) repeats profile. 473 515 IPR001680 GO:0005515
Mepo3g04787 560 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 389 426 - -
Mepo3g04787 560 ProSitePatterns Trp-Asp (WD) repeats signature. 366 380 IPR019775 -
Mepo3g04787 560 PRINTS G protein beta WD-40 repeat signature 366 380 IPR020472 -
Mepo3g04787 560 PRINTS G protein beta WD-40 repeat signature 450 464 IPR020472 -
Mepo3g04787 560 PRINTS G protein beta WD-40 repeat signature 535 549 IPR020472 -
Mepo3g04787 560 ProSiteProfiles Trp-Asp (WD) repeats profile. 305 338 IPR001680 GO:0005515
Mepo3g04787 560 Pfam WD domain, G-beta repeat 469 506 IPR001680 GO:0005515
Mepo3g04787 560 Pfam WD domain, G-beta repeat 428 463 IPR001680 GO:0005515
Mepo3g04787 560 Pfam WD domain, G-beta repeat 511 548 IPR001680 GO:0005515
Mepo3g04787 560 Pfam WD domain, G-beta repeat 301 338 IPR001680 GO:0005515
Mepo3g04787 560 Pfam WD domain, G-beta repeat 342 379 IPR001680 GO:0005515
Mepo3g04787 560 Pfam WD domain, G-beta repeat 390 421 IPR001680 GO:0005515
Mepo3g04787 560 Gene3D - 106 174 IPR036285 -
Mepo3g04787 560 ProSiteProfiles Trp-Asp (WD) repeats profile. 516 548 IPR001680 GO:0005515
Mepo3g04787 560 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 516 548 - -
Mepo3g04787 560 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 431 465 - -
Mepo3g04787 560 ProSiteProfiles Trp-Asp (WD) repeats profile. 431 472 IPR001680 GO:0005515
Mepo3g04787 560 MobiDBLite consensus disorder prediction 85 102 - -
Mepo3g04787 560 SMART WD40_4 509 548 IPR001680 GO:0005515
Mepo3g04787 560 SMART WD40_4 340 379 IPR001680 GO:0005515
Mepo3g04787 560 SMART WD40_4 256 295 IPR001680 GO:0005515
Mepo3g04787 560 SMART WD40_4 382 421 IPR001680 GO:0005515
Mepo3g04787 560 SMART WD40_4 466 506 IPR001680 GO:0005515
Mepo3g04787 560 SMART WD40_4 298 338 IPR001680 GO:0005515
Mepo3g04787 560 SMART WD40_4 424 463 IPR001680 GO:0005515
Mepo3g04787 560 SUPERFAMILY PRP4-like 113 168 IPR036285 -
Mepo3g04787 560 PANTHER WD40 REPEAT PROTEIN 81 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04787 Mepo-Chr3 59820703 59827107 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04787 351 547 U-box Gene Family AT2G33340 22.172 2.33e-09 57.8