Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04777 ATGGCAGTTTCTTCTCTCTCAGCAACATTCATTCCTTCTCTTTCTCTATCCTCCAATTCTTCATCTTTGTTATCTTCAAAGGCAAAGCTTCAATCTCTATGCTTTGTTTCTGGTAACACGTTGAGAATTACAAACGCGAAACCTCTTCAGTTATCAACTGTTGTTCATGCTGCTCCTGAAGTTTTGAATTCTGAGGTTGATGACTTGGAGACTCCAAGCACGTCAAAAATTAGCATTGGGGATGATGCAGACATGATGGCACCGAAGCAGAAAATCAGAATCAAGCTTAGATCTTACTTGGTCCCCTTGATAGAGGATTCTTGCAAACAGATATTGGATGCAGCAAGAACTACCAATGCAAAAACAATGGGTCCTGTTCCTTTACCAACCAAGAAACGAATTCACTGTGTCCTTAAATCTCCACACGTACACAAGGATGCTCGGTTCCATTTCGAGATCAGAACTCATCAGCGTGTCATTGATATTCTCTTTCCAACAGCACAAACAATAGATTCTCTTATGCAGCTTGATCTTCCTGCTGGTGTTGATGTCGAAGTCAAGCTCTAA 567 0.4109 MAVSSLSATFIPSLSLSSNSSSLLSSKAKLQSLCFVSGNTLRITNAKPLQLSTVVHAAPEVLNSEVDDLETPSTSKISIGDDADMMAPKQKIRIKLRSYLVPLIEDSCKQILDAARTTNAKTMGPVPLPTKKRIHCVLKSPHVHKDARFHFEIRTHQRVIDILFPTAQTIDSLMQLDLPAGVDVEVKL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04777 188 ProSitePatterns Ribosomal protein S10 signature. 115 130 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mepo3g04777 188 PRINTS Ribosomal protein S10 family signature 147 161 IPR001848 GO:0003735|GO:0005840|GO:0006412
Mepo3g04777 188 PRINTS Ribosomal protein S10 family signature 91 104 IPR001848 GO:0003735|GO:0005840|GO:0006412
Mepo3g04777 188 PRINTS Ribosomal protein S10 family signature 126 141 IPR001848 GO:0003735|GO:0005840|GO:0006412
Mepo3g04777 188 NCBIfam 30S ribosomal protein S10 90 187 IPR001848 GO:0003735|GO:0005840|GO:0006412
Mepo3g04777 188 Gene3D Ribosomal protein S10 domain 80 188 IPR036838 -
Mepo3g04777 188 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 25 188 IPR001848 GO:0003735|GO:0005840|GO:0006412
Mepo3g04777 188 Hamap 30S ribosomal protein S10 [rpsJ]. 89 188 IPR001848 GO:0003735|GO:0005840|GO:0006412
Mepo3g04777 188 FunFam 30S ribosomal protein S10 89 188 - -
Mepo3g04777 188 SUPERFAMILY Ribosomal protein S10 91 188 IPR036838 -
Mepo3g04777 188 SMART Ribosomal_S10_2 93 187 IPR027486 -
Mepo3g04777 188 Pfam Ribosomal protein S10p/S20e 93 187 IPR027486 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04777 91 188 Cytoplasmic Ribosomal Protein Gene Family AT5G62300 33.333 6.25e-09 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04777 K02946 - gmx:100306286 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g04777 3 59722129 59724517 Mepo3g04777 3 59722129 59724517 ECH