Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04637 ATGGAGAAAGTAGACTCTGAAATCATCCCTATGCCTTTCCCTCCTTACCGTCGATCTCACTTCCGCAGCCATACTTACACCACCCTTCTCCGTATTCTCACCCACCTTTCTCCTTTCACCGCTTCAACTCAACAACCCCTCAATGTTCCTGATAATGGCAATGTTGGAATGGGGCAAGAAAACCAGGAAAAGGAGCCTGAGTACTCTGAGTTAAAAGTTGGTTCTGATGTCAAGGATCCCAAGGGTCTAATACCCTTGAAGGAAATGCATGATGTCCATGAGACCATTGAATGTGTTGGAGACAAGGGCAAGGATTTGAGTGCCAATGCTATGGTCCTAGATGACGCAGCAGAATTTCTTATGGGAGGAGATGAACCATCTACACAAACAGATGGTTTTCATTTGGAACAATTGATGATGGACGAGTTGGAGCTTGTTGTGAAAGGGGCTGAAGATCCTGTTTGTGATGATAGTTTAATCCCCTTTTACTGTGAGAAACAGAATAGTGGTAGTGAAGTTGATTTGATGGATTGCCGAGTAGAACATGTTGAACATCTGCGTTCTGATACAAACACGTCTGAAAGTGTAAGTGAGGTGCAGTTGCAAGTACAATGGGAGCTTAATCAACTTGACTCGGAAGGCTTTCATGTGTCCGAGTCAACAAAAGGACAAGCTTCTGATTCGGTGATTAGTAGTACATCAAGTATAAACAATGAAAGACAACTAAATGAAACAGAATTGGTAACACTGGTTTGTCCTCTAGCGGGATCTCTTCCTACTATTCAAGAGGGTGAATTTGAGAAGGAAGAACAGAGTGATCATAAGGTTGATGAAGCAACTCATAGTTCTTTAGATCTTGATACGAATATTGAAGCATTGAATATGATAGAAGATGGTGGATTACTGGATTCTACAATTATGAAAGATAAATGTGAAACACAAAATGAAGAGAACTCTGAGAAGTTAATTTGTGTGAAAAATACAACAAATTCTTCCGATATTCTGAACAAAGGAGATTTAGAAGAGGGAGAAATTTCTGGAGATTTTTCAATGGATGGAAACACATTTGATGTGTCTTCTGTGGATGCTATAGTTTCAGAACAGATGAAATTGGATGAGATTGAGAAACCTGGGAGTTCATTTGAAAACACGGCTTCTCCTTTCAATACGGGTATCTCCTTTCAAGGCTTTCCATCTAATCTCTTTATGGTAAATGCAATTCAAGATACACCAACTTTAACCAAAAATCAAGTCTTGCACAAAGGATTCATGGAAGAAACCTCTATCAAAGATCACGGGAACTTGTCTGTAGTACAGCAGATTGTTGGCAGCAGAAAGGAACAAAGTGGTCCTGATCCTAAGAAGAAGAAAAACAAAAAGCAGATGGTTGATGCCAGTGGGAGCAAACGTGGTCCTGGTTCTCAGGAGAAGAAAACTAGAAAGAGGAAGAAGTATCGAAAGAACAGAGCAGAAAAGAACAGAGAGCTAGGTGGTGGTAAGAGGCCAAAGTTGAATCCAGAACAAAAACCAAAACCTAAACAATGTCGCCATTATATGAAAGGAAGATGCCATGAGGGGGACAATTGCAATTTCTCACATGATGCTATTCCTTTAACAAAGTCCATGCCATGTGCTCACTCTGCCCGTGGCTCTTGTATGAAAGGGGGTGATTGCCCATATGATCATCAGCTCTCCAAGTATCCTTGTTCCAATTTTGTGTCTAAAGGCTCCTGTCAGAGAGGTCGTGATTGTAGGTTTTCACACCAGGTGCAAACCAGCCAAGATATACCTACACCTACAAATGCTTGCAAACTAGAGTTGAAGTCTCCTCTATCCTCAGGAAATACAAATTTCAGTACACCACTGAATAATCATGGCACTGGTTCCGTCCAACAAAACAACTCCAATTCTAAGGGAATTTCTTCTCACACCAATGTAGAACATAAGGTGACAGACGTTTCACAGACAAAGCCTACCTCAGCACCCAAAGGAATTAGATTTATAAATGTTGCTAACTTATCACCTAGTACACCAAAACAAGACATGGTACAACCAAACAAGGGAAATCTTGTCCACAGTGGAACATGTGCAGATAAAGGTCAAAATACTGCAGTAGTTTCTAAAAAAAGTCCAGCTGTCATGCCCAAAGGAGTCAACTTTCTTTCTTTCGGCAAAGGTTCTGTTTGCAGTTTTACACGTTCTGTTCAATCCACTGCAGAAGGAATGATATTGAAGTTGCCTCAGTCAGTCAATTTTGGTTTGTCTGAACATTCAGTTTCATCTCTGAATAAGGATGATCATGGAAAAGCTAGTGACAGAACTGCACAAAATTTTCCACAAACTGCGCTATTGTCACGTGAGATTTCAGACAAAAACCAATCCATGGCAGAACGAATGAAATCAAGGTTTCTAGGGAAAGATTCAACCGATGATTCTGTGAGGGATCACAGCCATTGTAAATCAGTTCAAGAGGTAAATAAGGCATCCGATAATTCTCAGGCTTCAACTGTGACCTCAGCTACGCTTCTTGCTAGTCCCTTTGTTTCATATCAGTCTTCAGCAGGCCTAGTATCTGGATGTCATAAACAAGCATCAAACTTAGGCCAAAGGGCACTCATTTCGACTTTAGCTTTTGCAGCGGAGCATGAATCAAATATTAAGATGAAATGCCCTACTGGTGCTTCACCTGTATGA 2694 0.4083 MEKVDSEIIPMPFPPYRRSHFRSHTYTTLLRILTHLSPFTASTQQPLNVPDNGNVGMGQENQEKEPEYSELKVGSDVKDPKGLIPLKEMHDVHETIECVGDKGKDLSANAMVLDDAAEFLMGGDEPSTQTDGFHLEQLMMDELELVVKGAEDPVCDDSLIPFYCEKQNSGSEVDLMDCRVEHVEHLRSDTNTSESVSEVQLQVQWELNQLDSEGFHVSESTKGQASDSVISSTSSINNERQLNETELVTLVCPLAGSLPTIQEGEFEKEEQSDHKVDEATHSSLDLDTNIEALNMIEDGGLLDSTIMKDKCETQNEENSEKLICVKNTTNSSDILNKGDLEEGEISGDFSMDGNTFDVSSVDAIVSEQMKLDEIEKPGSSFENTASPFNTGISFQGFPSNLFMVNAIQDTPTLTKNQVLHKGFMEETSIKDHGNLSVVQQIVGSRKEQSGPDPKKKKNKKQMVDASGSKRGPGSQEKKTRKRKKYRKNRAEKNRELGGGKRPKLNPEQKPKPKQCRHYMKGRCHEGDNCNFSHDAIPLTKSMPCAHSARGSCMKGGDCPYDHQLSKYPCSNFVSKGSCQRGRDCRFSHQVQTSQDIPTPTNACKLELKSPLSSGNTNFSTPLNNHGTGSVQQNNSNSKGISSHTNVEHKVTDVSQTKPTSAPKGIRFINVANLSPSTPKQDMVQPNKGNLVHSGTCADKGQNTAVVSKKSPAVMPKGVNFLSFGKGSVCSFTRSVQSTAEGMILKLPQSVNFGLSEHSVSSLNKDDHGKASDRTAQNFPQTALLSREISDKNQSMAERMKSRFLGKDSTDDSVRDHSHCKSVQEVNKASDNSQASTVTSATLLASPFVSYQSSAGLVSGCHKQASNLGQRALISTLAFAAEHESNIKMKCPTGASPV 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04637 897 Coils Coil 475 495 - -
Mepo3g04637 897 SUPERFAMILY CCCH zinc finger 567 593 IPR036855 GO:0046872
Mepo3g04637 897 MobiDBLite consensus disorder prediction 43 75 - -
Mepo3g04637 897 SUPERFAMILY CCCH zinc finger 510 534 IPR036855 GO:0046872
Mepo3g04637 897 MobiDBLite consensus disorder prediction 475 489 - -
Mepo3g04637 897 SMART c3hfinal6 566 590 IPR000571 GO:0046872
Mepo3g04637 897 SMART c3hfinal6 538 564 IPR000571 GO:0046872
Mepo3g04637 897 SMART c3hfinal6 509 535 IPR000571 GO:0046872
Mepo3g04637 897 Pfam CCCH-type zinc finger 515 534 IPR041367 -
Mepo3g04637 897 MobiDBLite consensus disorder prediction 448 464 - -
Mepo3g04637 897 MobiDBLite consensus disorder prediction 614 642 - -
Mepo3g04637 897 ProSiteProfiles Zinc finger C3H1-type profile. 563 591 IPR000571 GO:0046872
Mepo3g04637 897 ProSiteProfiles Zinc finger C3H1-type profile. 538 562 IPR000571 GO:0046872
Mepo3g04637 897 Gene3D - 500 566 - -
Mepo3g04637 897 ProSiteProfiles Zinc finger C3H1-type profile. 509 536 IPR000571 GO:0046872
Mepo3g04637 897 MobiDBLite consensus disorder prediction 216 237 - -
Mepo3g04637 897 MobiDBLite consensus disorder prediction 43 59 - -
Mepo3g04637 897 MobiDBLite consensus disorder prediction 443 514 - -
Mepo3g04637 897 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 222 895 IPR045124 GO:0003723|GO:0045892
Mepo3g04637 897 MobiDBLite consensus disorder prediction 490 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04637 Mepo-Chr3 57641230 57649019 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04637 514 641 C3H Transcription Factor Family AT1G04990 27.132 4.41e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo3g04637 zf-CCCH_4 1.3e-07 CL0537