Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04557 ATGGCGTTCTTTGGTAAAATGGGGAAGCTACTCAAGAATTCTGCTGCCAAGCAGATTAATTACGGTGTATCTTTGGTATTTCAAGCAACTAGATCCATGTCATCCGGAAAGCTTTTTGTTGAAGGTCTTTCATATAGAACTGATGAAAATAGTCTCCGAAAACATTTTGCTCGCTACGGGGAAGTTCTTGATGCAAAGATTATCAAGGATCGTGAAACAGGCAGGTCCCGAGGTTTTGGTTACGTGACTTTTGCAACAACCAAGGAGGCGTCTGCTGCCTTTGAGATGATCAATATTTCCCTTCAGGCCATGAAAAACCAGGATCCTAATGGTCGGAGGGTACGAGTGAACTATGCTAGAGAAAGGTTGCGTCCTGGTGAGTTTTGTGCCTATAGTGTCCCAAGCAGCTATCACGGTAGCCACATCAAGACTAGTTACGCTGCTGATGGTGAAATAAGCAAAAGAACTAAGGATGGACCATTACGTTGTGATTATGAAAGAAACATAGTGATTGGTGATTTCCAGCTGCTGAATGCGCTGAATAGCATTTCAAAAGTTATCACGGTAGAGTAA 573 0.4276 MAFFGKMGKLLKNSAAKQINYGVSLVFQATRSMSSGKLFVEGLSYRTDENSLRKHFARYGEVLDAKIIKDRETGRSRGFGYVTFATTKEASAAFEMINISLQAMKNQDPNGRRVRVNYARERLRPGEFCAYSVPSSYHGSHIKTSYAADGEISKRTKDGPLRCDYERNIVIGDFQLLNALNSISKVITVE 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04557 190 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 121 IPR000504 GO:0003723
Mepo3g04557 190 Gene3D - 25 160 IPR012677 -
Mepo3g04557 190 CDD RRM2_NsCP33_like 37 119 - -
Mepo3g04557 190 SMART rrm1_1 37 117 IPR000504 GO:0003723
Mepo3g04557 190 SUPERFAMILY RNA-binding domain, RBD 26 126 IPR035979 GO:0003676
Mepo3g04557 190 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 98 IPR000504 GO:0003723
Mepo3g04557 190 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 32 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04557 Mepo-Chr3 56437641 56440952 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04557 10 95 C2H2 Transcription Factor Family AT2G19380 30.233 3.16e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04557 K12741 - mtr:11434380 159.073