Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04535 ATGCCCTCTAAGAATTCTGTTCAGCATGGTTTGAAGACCGGGAGAAATATTGATGCTGATGGTCCCTCAACTTTACCTCCGAAAAATAACTCTCTGACTCCTTCGATATCTGCTGAGGAATGTAAGCATGTGTTGGAAGATGTTGAGTTTAAAGATGGAAATGAGAGCGAGGAAGCAAGGCTATCAAGTGACAGAATCTACCAATCTGAAACTACAACAGAAAGCTATAGCTATTTATCTGAAGCAAGTGTAGCGAAACTTGAACAGAGAATTAGCCGACTCGAGAAATTGCATAAAAATTTGAAGAAAGCAAGTGGCAAGAGAAGGTTCATAGCAGAGGAGTTAGCAAAGTTTGGGAAAGGAAATGTTACCTCTAAGATTTTCACTTATCGGGAGCTATGCCTCGCAACTGAAAATTTTCAACCTACCAATATGATCGGAGAAGGAGGTTTTGGAAGGGTATACAAAGGAACAATTAAAAACACAAATCAAATTGTTGCTGTGAAGGCACTTGACAGAAATGGATTCCAAGGGAACAGAGAATTTGTTGTAGAGGTTTTGATTTTGAGTCTTTTGCACCATCCTAACCTTGTTAACTTGGTAGGGTATTGTGCTGAAGGTGATCAGAGGGTTTTGGTTTATGAATATATGGCCAATGGTTCCTTAGAAGATCACTTGCTTGATTTAGCTCCTGGTAAAAAGCCTTTGGACTGGAAAACAAGAATGAAAATTGCAGAAGGAGCAGCAAAAGGGCTTGAATATTTACACGAAGAAGCAAACCCTCCGGTGATATATCGCGATTTCAAAGCATCAAACATACTATTAGATGAAAACTACAATCCAAAGCTTTCTGATTTTGGACTTGCAAAGCTTGGCCCGACTGGTGAGAAAGAACATGTATCCACCAGAGTGATGGGAACTTATGGCTATTGTGCTCCTGAGTATGCATCAACAGGGCAGCTTACTACAAAATCAGATGTGTATAGTTTTGGAGTTGTGTTTTTGGAGATTATCACAGGAAGAAGAGTCATTGACAATTCTAGGCCGTCAGAAGAGCAAAATTTAGTCCTTTGGGCACAACCTCTTCTAAGAGACAGAAAGAAATTCACACAAATGGCAGATCCATTGCTAGAAGATAAGTACCCTATAAAGGGTCTATATCAAGCTCTAGCAGTTGCAGCTATGTGTCTGCAAGAGGAAGCTGATACTAGGCCTTTAATCAGTGATGTAGTTACAGCTCTTGAGTTTTTAGCAAACAAGAAAGAAGAGGATAGAGAACAATATACAAAAGAGACTTTTGCTTCTCAGGGTGGAAACGATGAAGCTAATGTTGTACATGATGATGATGACGACGATGACGATGATGAAGAGGATGAAGATGGTGATGATGATGATGAGGATGCTGATAGTGATAATGATAATGATGATAAAGGTCATAGAAGATAG 1446 0.3956 MPSKNSVQHGLKTGRNIDADGPSTLPPKNNSLTPSISAEECKHVLEDVEFKDGNESEEARLSSDRIYQSETTTESYSYLSEASVAKLEQRISRLEKLHKNLKKASGKRRFIAEELAKFGKGNVTSKIFTYRELCLATENFQPTNMIGEGGFGRVYKGTIKNTNQIVAVKALDRNGFQGNREFVVEVLILSLLHHPNLVNLVGYCAEGDQRVLVYEYMANGSLEDHLLDLAPGKKPLDWKTRMKIAEGAAKGLEYLHEEANPPVIYRDFKASNILLDENYNPKLSDFGLAKLGPTGEKEHVSTRVMGTYGYCAPEYASTGQLTTKSDVYSFGVVFLEIITGRRVIDNSRPSEEQNLVLWAQPLLRDRKKFTQMADPLLEDKYPIKGLYQALAVAAMCLQEEADTRPLISDVVTALEFLANKKEEDREQYTKETFASQGGNDEANVVHDDDDDDDDDEEDEDGDDDDEDADSDNDNDDKGHRR 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04535 481 FunFam Serine/threonine-protein kinase PBS1 217 432 - -
Mepo3g04535 481 Gene3D Transferase(Phosphotransferase) domain 1 217 442 - -
Mepo3g04535 481 MobiDBLite consensus disorder prediction 444 472 - -
Mepo3g04535 481 FunFam Serine/threonine-protein kinase CDL1-like 111 216 - -
Mepo3g04535 481 ProSitePatterns Protein kinases ATP-binding region signature. 146 169 IPR017441 GO:0005524
Mepo3g04535 481 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Mepo3g04535 481 ProSiteProfiles Protein kinase domain profile. 140 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mepo3g04535 481 MobiDBLite consensus disorder prediction 424 481 - -
Mepo3g04535 481 Pfam Protein kinase domain 143 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mepo3g04535 481 CDD STKc_IRAK 146 415 - -
Mepo3g04535 481 PANTHER OS07G0668900 PROTEIN 88 426 - -
Mepo3g04535 481 Coils Coil 84 114 - -
Mepo3g04535 481 SUPERFAMILY Protein kinase-like (PK-like) 126 426 IPR011009 -
Mepo3g04535 481 Gene3D Phosphorylase Kinase; domain 1 125 216 - -
Mepo3g04535 481 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04535 Mepo-Chr3 55948702 55955238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04535 122 418 Glycoside Hydrolase AT3G07070 71.044 1.32e-160 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Mepo3g04535 Pkinase 2.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04535 - - gmx:100790474 584.719