Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04516 ATGTCACCTAGTTTCATCTTCGATCCTCCCAGCGACGAAGAAATTGAACTCTCCGAACACGATTCAGACGAATCCGATTCAGAACAATCACAACCCGAATCTCAATCAGGAGAAGACTCAGACCCAGACTCAGACTCAGAATCAGAACACCGCCGCAAAGAACCACGAGTTTCAAAGAAGAAAACACAGTCTCCATGGGACTTCACAGAATACTCTGAATCAGTTGCTGAAGAACACGCTCGCAGAAGTACAACATCAGTAGACGATAAAATCTCAGCTGTCAGAAAACGCTCAGCTCCGGTCGTTGCTTTGCCCGACAACGACGGCGACAGTAGTTCCGACTCCGAAGCTGATAAACGAGAAGATTATAGACCAGAAGAAGAAGATGAAGAAGATGGTAATGCTGGTGAAAACAAGTCCTTCTTTGCTCCTTCTGCTGGAACCTCTTTCAGTGCGGATTCCTTCTTGCAACTCAATTTGTCTCGCCCTTTACTCCGGGCTTGCGAGGTCTTGGGGTATTCTAAACCAACACCAATTCAGGCGGCTTGTATACCATTAGCATTGACTGGTCGTGATATATGTGGAAGTGCCATTACTGGATCGGGAAAGACAGCTGCATTTGCACTACCTACTTTAGAGAGATTGCTGTTCCGTCCAAAAAGTGTGCATGCAATAAGGGTCCTTATTCTTACTCCAACCAGAGAGTTGGCAGCCCAAGTTCAAAGTATGATTAAGAACCTTGGTCAATTTACTGATATAAGGTGTTGCCTGATTGTCGGTGGTCTGTCAACAAAGGAGCAAGAGGCTGCCTTGAGATCAAGGCCAGACATTGTTGTGGCTACTCCAGGACGTATGATAGACCATTTACGCAATTCCATGTCGGTGGATTTGGATGATCTTTCTGTTTTAATCCTTGATGAAGCAGATCGTCTTTTGGAGCTAGGATTTAGTGCTGAAATTCAGGAACTTGTTCGCGTGTGTCCCAAAAAAAGGCAGACCATGTTGTTTTCCGCAACCATGACTGAGGAGGTTGATGATCTTATTAAACTTTCCCTATCCAAACCCCTGCGCCTTTCTGCTGATCCATTGGCAAAACGGCCAGCATCCTTGACCGAGGAGGTGGTTAGACTAAGAAGAATGCGTGAAGTAAATCAGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTTACTTCTAAAGTGATCATTTTCAGTGGAACGAAGCAAGCTGCACATAGATTGAGGATTATATTTGGATTAGCTGGATTGAAAGCTGCTGAGCTTCATGGAAATCTTACTCAGGCCCAACGTCTAGGAGCTTTGGAACAATTTAGGAAGCAGCAAGTGGATTTTCTGGTTGCAACTGATGTGGCTGCTCGTGGACTTGACATCATAGGTGTTCAAACAGTTATCAATTTTGCATGTCCACGTGATCTTACCAGCTATGTTCATCGAGTGGGTCGTACAGCAAGAGCTGGAAGAGCGGGATCTGCAGTCACATTTGTTACTGATAATGACCGGTCACTTCTAAAAGCTATTGCAAAGAGGGCTGGTTCAAAGCTGAAAAGCCGCATTGTTGCAGAGCAATCTATACTAAAGTGGTCTCAAGTAATTGAGCAAATGGAGGACCAAATTTCTGAAGTACTTCAAGAAGAGAGAGAAGAAATGATCCTAAGGAAAGCTGAAATGGAGGCCACAAAGGCCGAAAACATGATTGCACATAGGGATGAGATTTTCTCCCGCCCCAAAAGAACCTGGTTTGTTACAGAGAAGGAGAAGAAGATTTCGGCAAAAGCAGCAAAGGCATCACTGGATAAAGAAGATGGTTCTTCTCATAAGATGGTTAGTGCCCAACAAGCTGAAGACCTCAAAATGAAGGAAAAGAGGAAGCGGGAGCGAGAGAAAAATATGCCTAGAAAGAAGCGCAGAAAGTTGGAAGCAGCTAGGGAGATGTTGGAGGATGACGAGCATGATGACAAGCCAAAAGGCAAGGGGACAGATAAGAATGAAAAGGCTGGACTGACCCTTGTTGATCTTGCGTACCGACGTGCAAAAGCAGTAAAGGCCACCAAGAGGGCATTAGATTCTGGAAAGATTATTAAGAAGCCTCAAAAGAAATCTAATAAATCTAATCCCTCGCGAAAGACTTCTTCTTCAAGGACAGAAGAGATGCGGGAGTTATTCCAGACTGACATGAAGGATAAAAAGCCGAAACAGAGAGGTTCTGGAGTAGGAAAGAAGGCCCAAAAATCATTCAAAAGCAAGTCAAGGTACAAGAGGAAGTAG 2286 0.4444 MSPSFIFDPPSDEEIELSEHDSDESDSEQSQPESQSGEDSDPDSDSESEHRRKEPRVSKKKTQSPWDFTEYSESVAEEHARRSTTSVDDKISAVRKRSAPVVALPDNDGDSSSDSEADKREDYRPEEEDEEDGNAGENKSFFAPSAGTSFSADSFLQLNLSRPLLRACEVLGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLFRPKSVHAIRVLILTPTRELAAQVQSMIKNLGQFTDIRCCLIVGGLSTKEQEAALRSRPDIVVATPGRMIDHLRNSMSVDLDDLSVLILDEADRLLELGFSAEIQELVRVCPKKRQTMLFSATMTEEVDDLIKLSLSKPLRLSADPLAKRPASLTEEVVRLRRMREVNQEAVLLAMCSKTFTSKVIIFSGTKQAAHRLRIIFGLAGLKAAELHGNLTQAQRLGALEQFRKQQVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGRAGSAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSILKWSQVIEQMEDQISEVLQEEREEMILRKAEMEATKAENMIAHRDEIFSRPKRTWFVTEKEKKISAKAAKASLDKEDGSSHKMVSAQQAEDLKMKEKRKREREKNMPRKKRRKLEAAREMLEDDEHDDKPKGKGTDKNEKAGLTLVDLAYRRAKAVKATKRALDSGKIIKKPQKKSNKSNPSRKTSSSRTEEMRELFQTDMKDKKPKQRGSGVGKKAQKSFKSKSRYKRK 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04516 761 MobiDBLite consensus disorder prediction 72 95 - -
Mepo3g04516 761 Pfam DEAD/DEAH box helicase 177 347 IPR011545 GO:0003676|GO:0005524
Mepo3g04516 761 MobiDBLite consensus disorder prediction 684 702 - -
Mepo3g04516 761 CDD DEADc_DDX27 164 359 - -
Mepo3g04516 761 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 369 532 IPR001650 -
Mepo3g04516 761 Coils Coil 617 637 - -
Mepo3g04516 761 MobiDBLite consensus disorder prediction 716 741 - -
Mepo3g04516 761 Gene3D - 368 545 IPR027417 -
Mepo3g04516 761 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 304 312 IPR000629 -
Mepo3g04516 761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 225 513 IPR027417 -
Mepo3g04516 761 MobiDBLite consensus disorder prediction 1 142 - -
Mepo3g04516 761 MobiDBLite consensus disorder prediction 599 761 - -
Mepo3g04516 761 Pfam Helicase conserved C-terminal domain 390 493 IPR001650 -
Mepo3g04516 761 Coils Coil 531 569 - -
Mepo3g04516 761 Gene3D - 115 360 IPR027417 -
Mepo3g04516 761 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 153 181 IPR014014 GO:0003724
Mepo3g04516 761 CDD SF2_C_DEAD 370 502 - -
Mepo3g04516 761 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 184 358 IPR014001 -
Mepo3g04516 761 MobiDBLite consensus disorder prediction 639 671 - -
Mepo3g04516 761 SMART helicmild6 408 493 IPR001650 -
Mepo3g04516 761 MobiDBLite consensus disorder prediction 12 28 - -
Mepo3g04516 761 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 106 712 - -
Mepo3g04516 761 MobiDBLite consensus disorder prediction 44 63 - -
Mepo3g04516 761 SMART ultradead3 172 373 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04516 Mepo-Chr3 55648446 55658003 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04516 153 510 Eukaryotic Initiation Factors Gene Family AT3G13920 33.795 6.56e-53 187