Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04444 ATGGAGCTACCAAATGAAGGTGTAGAAGGATCTTCTCAAAAGAAAATGGGAAGAGGGAAAATTGAAATCAAGAGGATTGAAAACACTACCAATAGGCAAGTCACTTTTTGCAAACGACGCAATGGATTGCTGAAGAAAGCCTATGAATTATCTGTTCTTTGTGATGCTGAAGTTGCCCTTGTTGTCTTCTCGACCCGCGGTCGCTTGTATGAATATGCCAACAATAGTGTTAGAGCAACTATTGAAAGGTACAAAAAAGCATGTGCTGCTTCCACTAACGCAGAATCTGTATCTGAAGCTAATACCCAGTTTTACCAGCAAGAATCATCCAAATTGAGAAGACAGATTCGAGATATTCAGAATCTAAATAGACACATCCTTGGTGAAGCTCTAGGATCTCTAAGTCTCAAAGAACTGAAGAATCTCGAGGGTAGATTGGAGAAAGGTTTAAGCAGAGTTAGATCTAGAAAGCATGAGACATTGTTTGCTGATGTGGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCATAACAATTATCTACGAGCTAAGATAGCTGAACATGAGAGAGCTCAACAACAGCAACAAAATTTGATGCCAGATCAAACAATGTGTGATCAGTCCTTACCTTCATCACAAGCATATGACCGAAATTTCTTTCCGGTAAATCTTCTTGGATCAGATCAGCAGCAGTATTCGCGTCAAGATCAAACTGCGCTCCAACTTGTGTGA 735 0.4027 MELPNEGVEGSSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKACAASTNAESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQQNLMPDQTMCDQSLPSSQAYDRNFFPVNLLGSDQQQYSRQDQTALQLV 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04444 244 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo3g04444 244 Coils Coil 105 125 - -
Mepo3g04444 244 Pfam K-box region 100 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo3g04444 244 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Mepo3g04444 244 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Mepo3g04444 244 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Mepo3g04444 244 Coils Coil 175 195 - -
Mepo3g04444 244 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Mepo3g04444 244 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Mepo3g04444 244 SUPERFAMILY SRF-like 17 93 IPR036879 GO:0003677|GO:0046983
Mepo3g04444 244 Gene3D - 28 100 IPR036879 GO:0003677|GO:0046983
Mepo3g04444 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Mepo3g04444 244 CDD MADS_MEF2_like 17 91 IPR033896 GO:0000977|GO:0045944
Mepo3g04444 244 FunFam agamous-like MADS-box protein AGL11 28 111 - -
Mepo3g04444 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 199 - -
Mepo3g04444 244 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04444 Mepo-Chr3 54849841 54857555 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04444 1 244 MADS-box Gene Family AT3G58780 69.880 4.43e-120 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mepo3g04444 K-box 3.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04444 K09264 - gmx:100817239 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g04444 3 54849841 54857555 Mepo3g04444 3 54849841 54857555 ECH