Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mepo3g04422 | ATGGACAAACTTTCGGGGGATTCTTTGCCAGCTCATGGTGCTGCAGGGCTGTCAGGGATTTCCTCACTTAATATTCCAAACAAAGGGGGAAGCAGTGCATGGAGAATACCGCACACGACTGATATATTTCACGAATCAAATGATGTTAGCTTGTTTTCTACATCCCTGCCTGTTCTTCCACATGAAAAGCTAAATTTGACTGATTCTGAACAAGATTCTGAGCAATCTGGTCAACCGGTGGATGATAACTTGCTGACATTAGACAAAGTTCACAAAGAGGATGAAGGAAATGATCTTTTTGATGATTTTGAAACCATGCTTCCTGATGATGAAGACGAGCTGTTAGCTGGGATAATGGATGATTTTGACCTTCGTAGGTTGCCAAATCAACTGGAGGATTTGGATGAAAATGATCTGTTTGTTAATGGAGGAGGATTTGAAATGGATTTTGAACTGCAAGAGGGTCTTAGTTTTGGTATTTCAAAGATGAGTATATCTGATGGAATTGCTTCCAATGGCATTGGACCTTATGCAATCCCAAATGGCGTGGGTACAGTGGCTGGGGAGCATCCCTACGGTGAGCATCCATCAAGGACATTGTTTGTTCGAAACATCAACAGTAATGTTGAGGACTCTGAATTAAGAACACTATTTGAGCAATATGGGGATATCAGAACTTTGTACACAGCATGCAAGCACAGGGGCTTCGTGATGATATCTTACTATGACATTCGATCTGCTCGTACTGCAATGCGTGCTTTACAAAACAAACCCTTGAGACGAAGAAAACTCGATATCCATTTTTCAATTCCTAAGGATAACCCATCGGAAAAAGATATAAACCAAGGAACCCTTGTAGTGTTCAATTTAGATCCATCGGTATCAAATGACGACCTTCGCCAAATATTTGGGGCTTATGGTGAGGTCAAGGAGATCAGGGAAACACCACACAAGAGACACCATAAATTTATTGAATTTTATGATGTTAGAGCAGCAGATGCAGCTCTTAAAGCATTAAATCGAAGTGACATTGCTGGCAAACGCATAAAGCTTGAACCAAGCCGCCCTGGTGGAGCACGTAGAAACTTGATGCAACAACTGAGTCAAGAACTGGAACAAGATGAAGCACGAACTTTTAGGAGTCAAGTAGGTTCACCTATAGCCAGTTCTCCCCCAGGTAGCTGGGCGCAATTTGGCAGTCCTGTTGAACCTAATCCATTAGGCTCTTACAGCAAGTCTCCTGGTTTGGGTCACGCCAGCCCTATTGGTACAAACCATTTGTCTGGATTGGCTGCAATTCTTTCCCCGCATACATCAACCTCTCCCAAAATTGCGCCGATTGGCAAGGACCCTGGAAGAGTTTCAAATCAGATGTTTACCAACTCTGCCAACTCTGGATCAACACAAGGAGTAGCTTTTCAGCATTCTATCTCTTTTCCTGAAAAGAAAGTAAACGCAAGTCCTAGGCCTATATCTGCTTTTGGTGAATCGAATTCAAGTTCATCGAGTGTTGGAACACTGTCTGGTCCGCAATTTCTTTGGGGAAGCCCGACTCCTTACTCAGAGAATTCAAACACAACTGCCTGGTCTTCATCTTCCCTTGGGCATCCATTTACATCTAGTGCCCAAAGGCAGGGTTTCCCATACACGGGTCATCGCAATCCTTTTCTTAGCTCCCAGCACCAGCATCATGTAGGATCTGCTCCATCTGGCCTTCCTCTTGAGCGGAATTTCAGATACTTTCCAGAGTCACCTGATGCTTCACTCATGAGTCCCATTGGATTTGGGAATTCAAATCGCGGTGATGGAAATTTTATGATGAACATGGGTTCTCGTTCATCTGCTGGGCATGGTATTGGCCTTTCAGCAACTACCAGTGAAATTGGTTCGCCTAATTTCGGAATGATGTCCCTACCTGGTCATGGTTCCTTGTTCCTTGGAAATAGTCTGTATGCTGGTCCAGGAGTATCTAGCATTGAGGGATTTGGTGAACGTGGACGAAGTAGGCGACCTGACAATATTGTGAACCAAGTTGAGAGTAAGAAGCTGTACCAGCTTGATCTTGACAAAATCGTCAATGGTGAAGATACAAGGACTACTTTAATGATTAAAAACATTCCTAACAAGTACACCTCTAAGATGCTGCTTGCTGCAATTGATGAGAATCACCAAGGGACTTATGATTTCCTCTACTTGCCAATCGACTTTAAAAATAAGTGTAATGTGGGTTATGCTTTCATCAATATGGTCTCTCCTTCACACATCGTCGCCTTCTTTAAGGCTTTTAATGGGAAGAAATGGGAGAAGTTTAATAGCGAAAAAGTTGCTTCACTAGCATATGCACGAATTCAAGGAAAGGCTGCACTTGTGATGCATTTTCAGAATTCCAGCTTAATGAATGAGGATAAGCGGTGTCGACCAATCCTCTTTCATTCAGAAGGCCAAGATACTAGTGACCAGGAACATTTTCTATCCAGCAACTTGAATATATGTATTCGTCAACCGGATGGATCTTACTCAGGTGATATGTTGGAGAGCCCCAAGGGTAATTCGGACGATAACCTCGAGAAAGAATAA | 2577 | 0.43 | MDKLSGDSLPAHGAAGLSGISSLNIPNKGGSSAWRIPHTTDIFHESNDVSLFSTSLPVLPHEKLNLTDSEQDSEQSGQPVDDNLLTLDKVHKEDEGNDLFDDFETMLPDDEDELLAGIMDDFDLRRLPNQLEDLDENDLFVNGGGFEMDFELQEGLSFGISKMSISDGIASNGIGPYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRSARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARTFRSQVGSPIASSPPGSWAQFGSPVEPNPLGSYSKSPGLGHASPIGTNHLSGLAAILSPHTSTSPKIAPIGKDPGRVSNQMFTNSANSGSTQGVAFQHSISFPEKKVNASPRPISAFGESNSSSSSVGTLSGPQFLWGSPTPYSENSNTTAWSSSSLGHPFTSSAQRQGFPYTGHRNPFLSSQHQHHVGSAPSGLPLERNFRYFPESPDASLMSPIGFGNSNRGDGNFMMNMGSRSSAGHGIGLSATTSEIGSPNFGMMSLPGHGSLFLGNSLYAGPGVSSIEGFGERGRSRRPDNIVNQVESKKLYQLDLDKIVNGEDTRTTLMIKNIPNKYTSKMLLAAIDENHQGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIVAFFKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTSDQEHFLSSNLNICIRQPDGSYSGDMLESPKGNSDDNLEKE | 858 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mepo3g04422 | 858 | SMART | rrm1_1 | 284 | 352 | IPR000504 | GO:0003723 | |
Mepo3g04422 | 858 | SMART | rrm1_1 | 700 | 776 | IPR000504 | GO:0003723 | |
Mepo3g04422 | 858 | SMART | rrm1_1 | 199 | 267 | IPR000504 | GO:0003723 | |
Mepo3g04422 | 858 | MobiDBLite | consensus disorder prediction | 484 | 506 | - | - | |
Mepo3g04422 | 858 | Pfam | RNA recognition motif 2 | 698 | 794 | IPR007201 | - | |
Mepo3g04422 | 858 | SUPERFAMILY | RNA-binding domain, RBD | 700 | 785 | IPR035979 | GO:0003676 | |
Mepo3g04422 | 858 | MobiDBLite | consensus disorder prediction | 374 | 416 | - | - | |
Mepo3g04422 | 858 | FunFam | MEI2-like protein 5 isoform 2 | 187 | 281 | - | - | |
Mepo3g04422 | 858 | MobiDBLite | consensus disorder prediction | 518 | 566 | - | - | |
Mepo3g04422 | 858 | MobiDBLite | consensus disorder prediction | 518 | 571 | - | - | |
Mepo3g04422 | 858 | MobiDBLite | consensus disorder prediction | 838 | 858 | - | - | |
Mepo3g04422 | 858 | MobiDBLite | consensus disorder prediction | 491 | 506 | - | - | |
Mepo3g04422 | 858 | FunFam | Protein MEI2-like 1 | 282 | 377 | - | - | |
Mepo3g04422 | 858 | Gene3D | - | 282 | 379 | IPR012677 | - | |
Mepo3g04422 | 858 | Gene3D | - | 692 | 787 | IPR012677 | - | |
Mepo3g04422 | 858 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Mepo3g04422 | 858 | SUPERFAMILY | RNA-binding domain, RBD | 195 | 358 | IPR035979 | GO:0003676 | |
Mepo3g04422 | 858 | CDD | RRM3_MEI2_like | 701 | 786 | IPR034454 | - | |
Mepo3g04422 | 858 | MobiDBLite | consensus disorder prediction | 439 | 467 | - | - | |
Mepo3g04422 | 858 | CDD | RRM2_MEI2_like | 282 | 352 | - | - | |
Mepo3g04422 | 858 | Gene3D | - | 187 | 281 | IPR012677 | - | |
Mepo3g04422 | 858 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 283 | 356 | IPR000504 | GO:0003723 | |
Mepo3g04422 | 858 | MobiDBLite | consensus disorder prediction | 374 | 396 | - | - | |
Mepo3g04422 | 858 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 200 | 264 | IPR000504 | GO:0003723 | |
Mepo3g04422 | 858 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 285 | 350 | IPR000504 | GO:0003723 | |
Mepo3g04422 | 858 | CDD | RRM1_MEI2_like | 197 | 273 | IPR034453 | - | |
Mepo3g04422 | 858 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 198 | 271 | IPR000504 | GO:0003723 | |
Mepo3g04422 | 858 | PANTHER | RNA RECOGNITION MOTIF-CONTAINING | 115 | 829 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mepo3g04422 | Mepo-Chr3 | 54553252 | 54560937 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mepo3g04422 | 193 | 509 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 23.563 | 2.49e-11 | 65.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mepo3g04422 | - | - | gmx:100812324 | 1456.81 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Mepo3g04422 | 3 | 54553252 | 54560937 | Mepo3g04422 | 3 | 54553252 | 54560937 | ECH |