Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04422 ATGGACAAACTTTCGGGGGATTCTTTGCCAGCTCATGGTGCTGCAGGGCTGTCAGGGATTTCCTCACTTAATATTCCAAACAAAGGGGGAAGCAGTGCATGGAGAATACCGCACACGACTGATATATTTCACGAATCAAATGATGTTAGCTTGTTTTCTACATCCCTGCCTGTTCTTCCACATGAAAAGCTAAATTTGACTGATTCTGAACAAGATTCTGAGCAATCTGGTCAACCGGTGGATGATAACTTGCTGACATTAGACAAAGTTCACAAAGAGGATGAAGGAAATGATCTTTTTGATGATTTTGAAACCATGCTTCCTGATGATGAAGACGAGCTGTTAGCTGGGATAATGGATGATTTTGACCTTCGTAGGTTGCCAAATCAACTGGAGGATTTGGATGAAAATGATCTGTTTGTTAATGGAGGAGGATTTGAAATGGATTTTGAACTGCAAGAGGGTCTTAGTTTTGGTATTTCAAAGATGAGTATATCTGATGGAATTGCTTCCAATGGCATTGGACCTTATGCAATCCCAAATGGCGTGGGTACAGTGGCTGGGGAGCATCCCTACGGTGAGCATCCATCAAGGACATTGTTTGTTCGAAACATCAACAGTAATGTTGAGGACTCTGAATTAAGAACACTATTTGAGCAATATGGGGATATCAGAACTTTGTACACAGCATGCAAGCACAGGGGCTTCGTGATGATATCTTACTATGACATTCGATCTGCTCGTACTGCAATGCGTGCTTTACAAAACAAACCCTTGAGACGAAGAAAACTCGATATCCATTTTTCAATTCCTAAGGATAACCCATCGGAAAAAGATATAAACCAAGGAACCCTTGTAGTGTTCAATTTAGATCCATCGGTATCAAATGACGACCTTCGCCAAATATTTGGGGCTTATGGTGAGGTCAAGGAGATCAGGGAAACACCACACAAGAGACACCATAAATTTATTGAATTTTATGATGTTAGAGCAGCAGATGCAGCTCTTAAAGCATTAAATCGAAGTGACATTGCTGGCAAACGCATAAAGCTTGAACCAAGCCGCCCTGGTGGAGCACGTAGAAACTTGATGCAACAACTGAGTCAAGAACTGGAACAAGATGAAGCACGAACTTTTAGGAGTCAAGTAGGTTCACCTATAGCCAGTTCTCCCCCAGGTAGCTGGGCGCAATTTGGCAGTCCTGTTGAACCTAATCCATTAGGCTCTTACAGCAAGTCTCCTGGTTTGGGTCACGCCAGCCCTATTGGTACAAACCATTTGTCTGGATTGGCTGCAATTCTTTCCCCGCATACATCAACCTCTCCCAAAATTGCGCCGATTGGCAAGGACCCTGGAAGAGTTTCAAATCAGATGTTTACCAACTCTGCCAACTCTGGATCAACACAAGGAGTAGCTTTTCAGCATTCTATCTCTTTTCCTGAAAAGAAAGTAAACGCAAGTCCTAGGCCTATATCTGCTTTTGGTGAATCGAATTCAAGTTCATCGAGTGTTGGAACACTGTCTGGTCCGCAATTTCTTTGGGGAAGCCCGACTCCTTACTCAGAGAATTCAAACACAACTGCCTGGTCTTCATCTTCCCTTGGGCATCCATTTACATCTAGTGCCCAAAGGCAGGGTTTCCCATACACGGGTCATCGCAATCCTTTTCTTAGCTCCCAGCACCAGCATCATGTAGGATCTGCTCCATCTGGCCTTCCTCTTGAGCGGAATTTCAGATACTTTCCAGAGTCACCTGATGCTTCACTCATGAGTCCCATTGGATTTGGGAATTCAAATCGCGGTGATGGAAATTTTATGATGAACATGGGTTCTCGTTCATCTGCTGGGCATGGTATTGGCCTTTCAGCAACTACCAGTGAAATTGGTTCGCCTAATTTCGGAATGATGTCCCTACCTGGTCATGGTTCCTTGTTCCTTGGAAATAGTCTGTATGCTGGTCCAGGAGTATCTAGCATTGAGGGATTTGGTGAACGTGGACGAAGTAGGCGACCTGACAATATTGTGAACCAAGTTGAGAGTAAGAAGCTGTACCAGCTTGATCTTGACAAAATCGTCAATGGTGAAGATACAAGGACTACTTTAATGATTAAAAACATTCCTAACAAGTACACCTCTAAGATGCTGCTTGCTGCAATTGATGAGAATCACCAAGGGACTTATGATTTCCTCTACTTGCCAATCGACTTTAAAAATAAGTGTAATGTGGGTTATGCTTTCATCAATATGGTCTCTCCTTCACACATCGTCGCCTTCTTTAAGGCTTTTAATGGGAAGAAATGGGAGAAGTTTAATAGCGAAAAAGTTGCTTCACTAGCATATGCACGAATTCAAGGAAAGGCTGCACTTGTGATGCATTTTCAGAATTCCAGCTTAATGAATGAGGATAAGCGGTGTCGACCAATCCTCTTTCATTCAGAAGGCCAAGATACTAGTGACCAGGAACATTTTCTATCCAGCAACTTGAATATATGTATTCGTCAACCGGATGGATCTTACTCAGGTGATATGTTGGAGAGCCCCAAGGGTAATTCGGACGATAACCTCGAGAAAGAATAA 2577 0.43 MDKLSGDSLPAHGAAGLSGISSLNIPNKGGSSAWRIPHTTDIFHESNDVSLFSTSLPVLPHEKLNLTDSEQDSEQSGQPVDDNLLTLDKVHKEDEGNDLFDDFETMLPDDEDELLAGIMDDFDLRRLPNQLEDLDENDLFVNGGGFEMDFELQEGLSFGISKMSISDGIASNGIGPYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRSARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARTFRSQVGSPIASSPPGSWAQFGSPVEPNPLGSYSKSPGLGHASPIGTNHLSGLAAILSPHTSTSPKIAPIGKDPGRVSNQMFTNSANSGSTQGVAFQHSISFPEKKVNASPRPISAFGESNSSSSSVGTLSGPQFLWGSPTPYSENSNTTAWSSSSLGHPFTSSAQRQGFPYTGHRNPFLSSQHQHHVGSAPSGLPLERNFRYFPESPDASLMSPIGFGNSNRGDGNFMMNMGSRSSAGHGIGLSATTSEIGSPNFGMMSLPGHGSLFLGNSLYAGPGVSSIEGFGERGRSRRPDNIVNQVESKKLYQLDLDKIVNGEDTRTTLMIKNIPNKYTSKMLLAAIDENHQGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIVAFFKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTSDQEHFLSSNLNICIRQPDGSYSGDMLESPKGNSDDNLEKE 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04422 858 SMART rrm1_1 284 352 IPR000504 GO:0003723
Mepo3g04422 858 SMART rrm1_1 700 776 IPR000504 GO:0003723
Mepo3g04422 858 SMART rrm1_1 199 267 IPR000504 GO:0003723
Mepo3g04422 858 MobiDBLite consensus disorder prediction 484 506 - -
Mepo3g04422 858 Pfam RNA recognition motif 2 698 794 IPR007201 -
Mepo3g04422 858 SUPERFAMILY RNA-binding domain, RBD 700 785 IPR035979 GO:0003676
Mepo3g04422 858 MobiDBLite consensus disorder prediction 374 416 - -
Mepo3g04422 858 FunFam MEI2-like protein 5 isoform 2 187 281 - -
Mepo3g04422 858 MobiDBLite consensus disorder prediction 518 566 - -
Mepo3g04422 858 MobiDBLite consensus disorder prediction 518 571 - -
Mepo3g04422 858 MobiDBLite consensus disorder prediction 838 858 - -
Mepo3g04422 858 MobiDBLite consensus disorder prediction 491 506 - -
Mepo3g04422 858 FunFam Protein MEI2-like 1 282 377 - -
Mepo3g04422 858 Gene3D - 282 379 IPR012677 -
Mepo3g04422 858 Gene3D - 692 787 IPR012677 -
Mepo3g04422 858 MobiDBLite consensus disorder prediction 1 22 - -
Mepo3g04422 858 SUPERFAMILY RNA-binding domain, RBD 195 358 IPR035979 GO:0003676
Mepo3g04422 858 CDD RRM3_MEI2_like 701 786 IPR034454 -
Mepo3g04422 858 MobiDBLite consensus disorder prediction 439 467 - -
Mepo3g04422 858 CDD RRM2_MEI2_like 282 352 - -
Mepo3g04422 858 Gene3D - 187 281 IPR012677 -
Mepo3g04422 858 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 356 IPR000504 GO:0003723
Mepo3g04422 858 MobiDBLite consensus disorder prediction 374 396 - -
Mepo3g04422 858 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 264 IPR000504 GO:0003723
Mepo3g04422 858 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 285 350 IPR000504 GO:0003723
Mepo3g04422 858 CDD RRM1_MEI2_like 197 273 IPR034453 -
Mepo3g04422 858 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 271 IPR000504 GO:0003723
Mepo3g04422 858 PANTHER RNA RECOGNITION MOTIF-CONTAINING 115 829 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04422 Mepo-Chr3 54553252 54560937 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04422 193 509 Eukaryotic Initiation Factors Gene Family AT3G16380 23.563 2.49e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04422 - - gmx:100812324 1456.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g04422 3 54553252 54560937 Mepo3g04422 3 54553252 54560937 ECH