Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04343 ATGAAGCATAAATTATGTGGTCACCAGAAATCTGTTTCATCTGTTTCCTGGAGTCCTAATGGCCAAGAGCTTCTTACATGTGGAGTGGAGGAAGCTGTTAGGCGTTGGGATGTCTCTACGGGTAAATGCCTGCAAGTTTATGAAAAGAATGGTTCTGGCCTGGTCTCCTGTGCATGGTTTCCTTGTGGAAAGTATATACTTTCTGGCCTCAGTGACAAAAGCATTTGCATGTGGGAATTAGACGGGAAAGAAGTTGAGTCTTGGAAAGGACAGAAAACCCTCAAGATTTCTGATTTGGAAATAACAGGTGACGGGGAACATATTCTGAGTATTTGTAAAGAAAATGCAATAGTGCTCTTCAATAAAGAAACGAAGGTTGAGAGATTTATTGAAGAGGATCAGACTATAACATCATTCTCTTTGTCAAAGGATAGCAGATTCTTGTTGGTTAATCTTCTGAACCAGGAAATACATCTTTGGAATATAGAAGGAGATCTTAAGCTTGTTGGGAAATATAAAAGTCATAGACGCTCCCGGTTTGTTATTAGATCTTGCTTTGGAGGGCTTAAGCAATCGTTTATTGCTAGTGGAAGTGAGGATTCACAGGTTTACATATGGCATAGAAGCTCAGGGGACTTGATAGATGTGTTGCCCGGTCATTCTGGAGCCGTTAACTGCGTGAGCTGGAATCCAGCTAACCCCCACATGTTGGCCTCAGCAAGTGATGACCGGACAGTCCGGATATGGGGCTTAAAGTGTCTGGATGCAAAGTACCCAAATGCATACAGCAATGGCAACAGTCATCACTGCAATTGTGGGGGAACTTAG 828 0.4263 MKHKLCGHQKSVSSVSWSPNGQELLTCGVEEAVRRWDVSTGKCLQVYEKNGSGLVSCAWFPCGKYILSGLSDKSICMWELDGKEVESWKGQKTLKISDLEITGDGEHILSICKENAIVLFNKETKVERFIEEDQTITSFSLSKDSRFLLVNLLNQEIHLWNIEGDLKLVGKYKSHRRSRFVIRSCFGGLKQSFIASGSEDSQVYIWHRSSGDLIDVLPGHSGAVNCVSWNPANPHMLASASDDRTVRIWGLKCLDAKYPNAYSNGNSHHCNCGGT 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04343 275 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 217 252 - -
Mepo3g04343 275 SUPERFAMILY WD40 repeat-like 3 249 IPR036322 GO:0005515
Mepo3g04343 275 Gene3D - 213 257 IPR015943 GO:0005515
Mepo3g04343 275 Pfam WD domain, G-beta repeat 3 37 IPR001680 GO:0005515
Mepo3g04343 275 Pfam WD domain, G-beta repeat 41 78 IPR001680 GO:0005515
Mepo3g04343 275 Pfam WD domain, G-beta repeat 212 249 IPR001680 GO:0005515
Mepo3g04343 275 Pfam WD domain, G-beta repeat 168 206 IPR001680 GO:0005515
Mepo3g04343 275 Gene3D - 1 212 IPR015943 GO:0005515
Mepo3g04343 275 PANTHER WD REPEAT PROTEIN 26-RELATED 2 252 - -
Mepo3g04343 275 ProSitePatterns Trp-Asp (WD) repeats signature. 66 80 IPR019775 -
Mepo3g04343 275 ProSiteProfiles Trp-Asp (WD) repeats profile. 217 252 IPR001680 GO:0005515
Mepo3g04343 275 PRINTS G protein beta WD-40 repeat signature 237 251 IPR020472 -
Mepo3g04343 275 PRINTS G protein beta WD-40 repeat signature 194 208 IPR020472 -
Mepo3g04343 275 PRINTS G protein beta WD-40 repeat signature 66 80 IPR020472 -
Mepo3g04343 275 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 5 42 - -
Mepo3g04343 275 SMART WD40_4 2 37 IPR001680 GO:0005515
Mepo3g04343 275 SMART WD40_4 210 250 IPR001680 GO:0005515
Mepo3g04343 275 SMART WD40_4 122 161 IPR001680 GO:0005515
Mepo3g04343 275 SMART WD40_4 165 207 IPR001680 GO:0005515
Mepo3g04343 275 SMART WD40_4 81 121 IPR001680 GO:0005515
Mepo3g04343 275 SMART WD40_4 40 79 IPR001680 GO:0005515
Mepo3g04343 275 ProSiteProfiles Trp-Asp (WD) repeats profile. 5 46 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04343 Mepo-Chr3 53051330 53054669 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04343 5 254 Eukaryotic Initiation Factors Gene Family AT2G46290 22.656 1.12e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04343 K22382 - gmx:100802844 497.278