Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04331 ATGAACAATACCGTTCCTGATTGGAATTTTGGGAGTGATAGTTTTGTCACCCATCAAAAGAAGCAACCTATGGGGCTGGACCATGAACTTGTGGAGCTTCTATGGCAGAATGGTCAAGTAGTATTGAATAGCCAAACAAATAAGAAACAAGTTGTGAATACAAATACACTCAACTCAAGACAAGTTCATAAGAATCTTCAATCAACAACTTTAAGCAACTTGATTCAAGATGATGAAACTGTTTCATGGATCCAACAATACCCTATTGAGGATCCACTTGAACAAGAATTATGTTCAAACCTTTTTTCTGAACTTCCACCTTGTAACGTCGAGTCTTACAATTCACAACCGACAAATACAAAACCGACTTTTGTTCATGAATTTCCTATGTCGGCTCCGAGGTTTCATCATCATGGTCCCGATTCATCGCAAAGAAACAATGATTTGTGTGGATCCAGCAAGGTTGTAAACTTTTCTCACTTTTCAAGACATCCCAATGTTACTTTAGCATCTACTAATGGTGATGCAAATTTTAAAGACAAAATTACGGGTAATCTGTCACAATGTGATATTAGAGAGTGTTCAACGATGACAGTTGGTTCGAGTTATTGCGGAAGCAACCAAGTCCAACAAGATCCTGATGTAAGCAGGGTATCAAGCAATGGTGTTTGGACTAATTTATCAACCGAGCCTGAACAAGTCAGAAATGATGTTCAGAAGACAATTCCTCGGCATGAGAATAGGAAATCGGAGAAGTTGGAACCTGCTTTTACTTCATCTTCAGGTGGTTCGGGAAGTAGTCTTGGAAAAACTTGTTCCTTATCTACAAGAAGTCATGACAAAAAGAGGAAAGTGATGGATGTTGAAGATTCAGTGGAACAAAGCGAGGATACAGAACTTAAATCAGCCGTGAGGAAAAAGGCGTCTCAGCGGTCAGGGTCGGCTCGTAGGAACCGTGCTGCTGAAGTTCATAATCTTTCAGAAAGAAGGCGAAGAGATAGGATTAATGAGAAGATGAAAGCGTTGCAACAACTCATACCTCACAGTAGTAAGACAGACAAAGCATCAATGTTAGAAGAGGCAATTGAATACTTGAAATCACTTCAGTTACAACTTCAGGTAATGTGGATGGGATCTGGCATGACACCAATGATGCTACCGGGATATCAGCACTATATGTCACAAATGGGTATGGGAATGACCACACCTTCGTTTCCTCCACTTCAAAATCCGATGCAATTACCGAGAATGCCTCTGGATCCGTCCGTTTCTTCGTCTCAGACGCCAAACCAGACATTAACGTGCCAAAATCCTGTTTTAGGTGCCTTCAACTACCAAAATCAGATGCAAAATCCTGCTCTTTCGGAGCAATATGCTCGTTACATGGGCTATCATCTTATGCAAAATGCTTCTCAGCCAATGAATATGTACAGATATGGTCCCCAAGCTGTACAAAATAGTCAAACAATGATTCCACCCAGCAACAGCAGTGGACCAATGAGTGGAACAGCAAACATTAATGATGCTGTGAGTGGCAAAATGGGTAGGCCAATACATGCTTCTCTATTGTCATAG 1575 0.4083 MNNTVPDWNFGSDSFVTHQKKQPMGLDHELVELLWQNGQVVLNSQTNKKQVVNTNTLNSRQVHKNLQSTTLSNLIQDDETVSWIQQYPIEDPLEQELCSNLFSELPPCNVESYNSQPTNTKPTFVHEFPMSAPRFHHHGPDSSQRNNDLCGSSKVVNFSHFSRHPNVTLASTNGDANFKDKITGNLSQCDIRECSTMTVGSSYCGSNQVQQDPDVSRVSSNGVWTNLSTEPEQVRNDVQKTIPRHENRKSEKLEPAFTSSSGGSGSSLGKTCSLSTRSHDKKRKVMDVEDSVEQSEDTELKSAVRKKASQRSGSARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQVMWMGSGMTPMMLPGYQHYMSQMGMGMTTPSFPPLQNPMQLPRMPLDPSVSSSQTPNQTLTCQNPVLGAFNYQNQMQNPALSEQYARYMGYHLMQNASQPMNMYRYGPQAVQNSQTMIPPSNSSGPMSGTANINDAVSGKMGRPIHASLLS 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04331 524 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 319 368 IPR011598 GO:0046983
Mepo3g04331 524 PANTHER TRANSCRIPTION FACTOR PIF3 17 485 IPR044273 GO:0003700|GO:0006355
Mepo3g04331 524 SMART finulus 325 374 IPR011598 GO:0046983
Mepo3g04331 524 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 322 397 IPR036638 GO:0046983
Mepo3g04331 524 FunFam Basic helix-loop-helix transcription factor 314 377 - -
Mepo3g04331 524 MobiDBLite consensus disorder prediction 237 253 - -
Mepo3g04331 524 Pfam Helix-loop-helix DNA-binding domain 323 369 IPR011598 GO:0046983
Mepo3g04331 524 MobiDBLite consensus disorder prediction 487 508 - -
Mepo3g04331 524 MobiDBLite consensus disorder prediction 254 274 - -
Mepo3g04331 524 MobiDBLite consensus disorder prediction 224 324 - -
Mepo3g04331 524 CDD bHLH_AtPIF_like 319 382 IPR047265 -
Mepo3g04331 524 MobiDBLite consensus disorder prediction 487 512 - -
Mepo3g04331 524 Coils Coil 325 345 - -
Mepo3g04331 524 MobiDBLite consensus disorder prediction 275 306 - -
Mepo3g04331 524 Gene3D - 314 375 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04331 Mepo-Chr3 52799041 52802762 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04331 8 498 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 36.078 2.66e-61 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo3g04331 HLH 1.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04331 K16189 - gmx:100800166 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g04331 3 52799041 52802762 Mepo3g04331 3 52799041 52802762 ECH