Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04310 ATGAACATGGAGGCACAACATGAGAGTGACGCTGAACCAGATGATGCCAGTAGGAAGCAAAATGAGGCAGCTGCTGTTGACCGGCTCAGTACAAGAGAATCAAATGTAGAGACGACGAGTAGGAACCCATCTACTAGTGAAAGGTGGGGTTCTTCATTTTTGAAAGACTGCCAGCCTATGAGCCCTCAAAATGGTTCTGAATCTGGGGATGACTCAAAAAGTGGATCAGACTATAGAAATGAAGATGAATCTGAAGATAATTCATCGGAAGGAAGAGGGGAAAAATTTGGCTCAGAAGATGAAGATGGACAAAAGGATTCAGGAAAAGGTCAAAGGGGAGATTCTGATGTTCCTGCTGAAGAGATGTTGTCTGATGATTATTATGAGCAGGATGGGGAAAAGCAGAGTGACTCAGTGCATTCTAGGGGTTTTCGTCCATCCACGGGATCAAACTCATGCCTTCAACCGATGTCTACCAATGTGAACAGCCGTGTGCATAGGAAGTCTAGGATTTTAGATGATGCTGAAGATGATGATGATGCTGATTTTGAAGAAGATGAACCAGATGAAGATGATCCTGATGATTCAGACTTTGAGCCCGCAACAAGCGGTCGTGGTGCAAACAAGTATAAAGATTGGGAAGGGGAAGACTCAGATGAAGCTGATGGTAGTGATGAGGACATAGATGTTTCGGATAATGATGATTTATACTTAGATAAGAAGGCTAAGGGAAGGCAACGAGGTAAATTTGGACAAAGTGTAAGATCAACCAGAGATTGTAAAGCATTTACCGCTTCCAGTCGACAAAGAAGAGTTAAATCATTTTTTGAAGATGAAGATGAGAACTCTACAGCAGAGAATTCTGACAGTGAGAGTGATGAAGATTTCAAAAGCTTGAAGAAGAGAGGTGTGCGTGTACGCAAGAATAATGGCCGATCATCAGCACCCACAAGTTTTTCTAGGCCTAGTAATGAGGTCCGCTCTTCTAGTAGGACTATCAGGAAAGTATCATATGTTGAAAGTGATGAAAGTGAAGGAGCTGATGAAGGGAAGAAGAAATCTCAAAAGGAAGAAATTGAAGTGGACGATGAGGACTCCATAGAAAAGGTGCTTTGGCATCAGCCGAAGGGCATGGCTGCAGAGGCTCAAAGGAATAATCAATCCATGGAGCCTGTTTTAATGAGTCACTTATTTGATTCTGAACCTGATTGGAACAATATGGAATTCTTGATAAAATGGAAAGGCCAGTCACATTTGCACTGTCAGTGGAAGTCTTTTGTTGATCTGCAAAATCTCAGTGGTTTTAAAAAAGTTTTGAATTATACCAAGAGAGTTACAGAGGAAATCAGAAACAGGATGGGAATATCGAGAGAAGAGATTGAGGTCAACGATGTGAGTAAAGAGATGGACATAGATATTATCAAGCAAAACAGTCAGGTGGAAAGAATAATTGCAGATAGGATTAGCAACGACAATTCTGGCAATGTGTTTCCAGAATATTTGGTCAAGTGGCAAGGACTATCTTATGCTGAAGTGACCTGGGAGAAGGACATTGATATTGCTTTTGCTCAAGACACTATTGATGAATATAAGGCTCGTGAGGCTGCAATGTCAGTTCAAGGAAAGATGGTAGACTTTCAGCGTAGGAAGAGCAAAGGAAGTTTGCGGAAACTTGACGAACAACCTGAATGGTTGAAGGGTGGAAAGCTTCGTGACTATCAACTTGAGGGTCTGAATTTTCTTGTTAACAGTTGGAAAAATGATACAAATGTTGTTTTAGCTGATGAAATGGGTCTTGGTAAAACTGTCCAATCAGTATCTATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTCCCATTGTCTACCTTATCAAACTGGGCCAAGGAATTCAGGAAGTGGCTTCCTGATCTGAATGTTATTGCTTATGTTGGTACTCGTTCTAGTAGAGAGGTTTGCCAACAATATGAATTTTGTAATGAGAAAAAGGCTGGGAAGCCAATTAAATTCAATGCACTGTTGACTACATATGAAGTAGTTCTGAAGGATAAGGCTGTTCTCTCGAAGATCAAATGGAACTATCTGATGGTAGATGAGGCTCATAGACTTAAAAACAGCGAGGCACAGTTGTATACCGCACTTTCAGAGTTCAACACAAAGAACAAGTTGCTGATCACTGGCACTCCGCTGCAAAATAGTGTTGAAGAGCTATGGGCTTTGCTACACTTCCTTGATTCTGATAAGTTCAAGAGCAAAGATGAATTTGTTCAAAACTATAAGAATCTAAGTTCTTTTAATGAGAATGAGCTTTCTAATCTTCACATGGAATTGAGGCCTCACATGCTTCGAAGAGTTATCAAAGATGTGGAAAAATCATTACCCCCAAAAATTGAGCGTATTCTTAGGGTGGATATGTCTCCTCTGCAGAAGCAGTATTATAAGTGGATTTTGGAACGCAACTTTCGTGATTTGAACAAAGGAGTTCGAGGGAATCAGGTTTCTCTTCTAAATATTGTAGTAGAATTGAAGAAGTGCTGTAATCATCCCTTCTTGTTTGAAAGTGCTGACCACGGTTATGGTGGGGACTCTGAAAGTAGTGACAGCAGTAAACTTGAGAAAATTGTCTTTAGCAGTGGCAAGCTTGTCATACTCGATAAGCTACTTGTCAGATTGCATGAAACAAAGCATCGTGTTCTGATTTTCTCTCAGATGGTTAGGATGTTAGATATACTGGCACAGTATATGTCACTTCGAGGATTTCAATTTCAGAGGCTTGATGGAAGTACAAAATCTGAGCTGCGACAACAGGCAATGGATCATTTCAACGCACCAGGTAGTGATGATTTTTGCTTCCTTCTTTCAACGCGAGCAGGTGGTTTGGGTATCAACCTTGCCACAGCAGACACTGTTATAATATTTGACTCAGATTGGAATCCTCAAAATGATCTACAGGCAATGAGTCGAGCTCATCGAATTGGGCAACAGGAAGTTGTTAACATATATAGATTTGTGACAAGCAAAAGTGTTGAAGAAGATATTTTAGAACGTGCTAAGAAGAAGATGGTTCTGGACCACTTGGTTATTCAAAAACTAAATGCAGAGGGTAAACTGGAGAAGAAAGAAGCCAAAAAAGGAGGAAGTTTTTTTGACAAAAATGAGCTCTCAGCAATCTTAAGATTTGGAGCAGAGGAGCTTTTTAAGGAAGAAAGGAATGATGAAGAGAGCAAGAAGCGACTCTTAAGTATGGACATAGATGAGATTCTTGAAAGAGCAGAGAAGGTTGAAGAAAAGGAAAATGGGAGTGAACAGGCACACGAGTTATTAAGTGCCTTTAAGGTTGCAAATTTTTGTAATGATGAAGATGATGGTAGTTTCTGGAGCCGGTGGATAAAGGCTGATTCTGTCGCTCAAGCAGAGAATGCTCTTGCTCCACGTGCTGCAAGAAATATCAAAAGCTATGCAGAGGCCGATCAATCTGAAAGAAGTAATAAAAGAAAAAAGAAGGAAAATGAATCAACTGAGCGGATTCCAAAACGACGGAAAGCAGATTATTCAGCTCATGTGATATCAATGATTGATGGAGCATCTGCCCAAGTGAGAAGCTGGTCATATGGGAATTTGTCTAAGCGAGACGCACTCCGGTTTTCTCGTTCCGTTATGAAATTTGGGAATGAGAGCCTAATCAATTTGATTGTTGCTGAAGTTGGTGGTGCAGTAGAAGCAGCTCCGCTCAAAGCACAAGTGGAACTCTTCAATACTTTGATTGATGGTTGTAGAGAAGCAGTGGAAGTTGGAAGTCTGGATCTGAAGGGGCCTTTGCTGGATTTCTATGGTGTCCCAGTGAAGGCAAATGAGTTACTTATCCGTGTTCAAGAGCTTCAACTGCTAGCAAAGCGCATTAGTCGGTATGAAGATCCTATTGCACAATTCCGTGTTTTAACATATCTCAAACCCTCAAACTGGTCAAAAGGTTGTGGGTGGAATCAAATTGATGATGCAAGATTGCTTCTTGGAGTACATTACCATGGATATGGTAATTGGGAAGTGATAAGGTTGGATGAAAGGCTTGGTCTTACGAAAAAAATTGCACCAGTGGAACTTCAGCATCATGAAACTTTCTTGCCACGAGCTCCAAATTTGAGAGACCGGGCTAATGCCCTGTTGGAACAAGAACTTGCTGTTCTTGGTGTGAAAAATGCCTCTAGCAAAGTTGGAAGGAAGACTTCCAAGAAAGAGAGAGAAGAGAGAGAGCTTCTTGTAGACATCTCTTTGTCGCGTGGGCAGGAGAAAAAGAAAAACATTGGTTCTTCTAAAGTTAATGTCCAAATGAGAAAGGATAGACTTCAGAAACCTCTAAATGTTGAACCTATTGTAAAAGAGGAGGGTGAAATGTCTGATGATGATGATGTATATGAGCAGTTCAAGGAGGGAAAATGGATGGAATGGTGTCAAGATCTGATGGTTGAAGAAATGAAGACTTTGAAACGTCTTCACAGGTTGCAGACAACCAGTGCAAGTCTTCCGAAGGAAAAGGTGCTTTCAAAAATCCGGAACTACTTGCAGCTTCTTGGGCGAAGGATAGATCAAATTGTTTCAGAACAGGAAGACGAACCCCATAAGCAAGATAGAATGACTACGAGATTGTGGAAGTATGTTTCTACCTTTTCCCATCTTTCAGGGGAGAGGCTTCACCAAATTTATTCAAAACTTAAACTGGAGCAAAATGCGGTAGGGGTTGGCTCCTCTCTTCCCAATGGGTCAGTATCTGGTCCATTTAGCCGAAATGGAAACCCTAATAATTCATTCCCTCGCCCTATGGAGAGGCAAACGAGATTTCAAAATGTGACAGCCCACCCAATGCGCAAACAAACTAATGATAAAGGCATGTCTGAGGCATGGAAACGAAGAAGAAGAGCCGAAAACGATGGTTGTTTCCAGGGTCAACCACCACCTCAAAGAATCACAAGTAATGGAATTCGACCGCTGGATCCTAACTCATTGGGAATCCTTGGGGCAGGACCATCTCAACGCTTCTCTGGTGATAAACTGCTTAAGACTCAACCTGCTGGGTCTCCTTCAAGACAAGAATTCTCTCTAGGAGTTGAGTAG 5130 0.4133 MNMEAQHESDAEPDDASRKQNEAAAVDRLSTRESNVETTSRNPSTSERWGSSFLKDCQPMSPQNGSESGDDSKSGSDYRNEDESEDNSSEGRGEKFGSEDEDGQKDSGKGQRGDSDVPAEEMLSDDYYEQDGEKQSDSVHSRGFRPSTGSNSCLQPMSTNVNSRVHRKSRILDDAEDDDDADFEEDEPDEDDPDDSDFEPATSGRGANKYKDWEGEDSDEADGSDEDIDVSDNDDLYLDKKAKGRQRGKFGQSVRSTRDCKAFTASSRQRRVKSFFEDEDENSTAENSDSESDEDFKSLKKRGVRVRKNNGRSSAPTSFSRPSNEVRSSSRTIRKVSYVESDESEGADEGKKKSQKEEIEVDDEDSIEKVLWHQPKGMAAEAQRNNQSMEPVLMSHLFDSEPDWNNMEFLIKWKGQSHLHCQWKSFVDLQNLSGFKKVLNYTKRVTEEIRNRMGISREEIEVNDVSKEMDIDIIKQNSQVERIIADRISNDNSGNVFPEYLVKWQGLSYAEVTWEKDIDIAFAQDTIDEYKAREAAMSVQGKMVDFQRRKSKGSLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWKNDTNVVLADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDLNVIAYVGTRSSREVCQQYEFCNEKKAGKPIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTALSEFNTKNKLLITGTPLQNSVEELWALLHFLDSDKFKSKDEFVQNYKNLSSFNENELSNLHMELRPHMLRRVIKDVEKSLPPKIERILRVDMSPLQKQYYKWILERNFRDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSESSDSSKLEKIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAQYMSLRGFQFQRLDGSTKSELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGKLEKKEAKKGGSFFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKENGSEQAHELLSAFKVANFCNDEDDGSFWSRWIKADSVAQAENALAPRAARNIKSYAEADQSERSNKRKKKENESTERIPKRRKADYSAHVISMIDGASAQVRSWSYGNLSKRDALRFSRSVMKFGNESLINLIVAEVGGAVEAAPLKAQVELFNTLIDGCREAVEVGSLDLKGPLLDFYGVPVKANELLIRVQELQLLAKRISRYEDPIAQFRVLTYLKPSNWSKGCGWNQIDDARLLLGVHYHGYGNWEVIRLDERLGLTKKIAPVELQHHETFLPRAPNLRDRANALLEQELAVLGVKNASSKVGRKTSKKEREERELLVDISLSRGQEKKKNIGSSKVNVQMRKDRLQKPLNVEPIVKEEGEMSDDDDVYEQFKEGKWMEWCQDLMVEEMKTLKRLHRLQTTSASLPKEKVLSKIRNYLQLLGRRIDQIVSEQEDEPHKQDRMTTRLWKYVSTFSHLSGERLHQIYSKLKLEQNAVGVGSSLPNGSVSGPFSRNGNPNNSFPRPMERQTRFQNVTAHPMRKQTNDKGMSEAWKRRRRAENDGCFQGQPPPQRITSNGIRPLDPNSLGILGAGPSQRFSGDKLLKTQPAGSPSRQEFSLGVE 1709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04310 1709 Pfam Domain of unknown function (DUF4208) 1483 1576 IPR025260 -
Mepo3g04310 1709 Coils Coil 1030 1050 - -
Mepo3g04310 1709 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 582 754 IPR014001 -
Mepo3g04310 1709 MobiDBLite consensus disorder prediction 175 197 - -
Mepo3g04310 1709 CDD CD2_tandem 476 532 - -
Mepo3g04310 1709 Coils Coil 1163 1183 - -
Mepo3g04310 1709 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 890 1041 IPR001650 -
Mepo3g04310 1709 MobiDBLite consensus disorder prediction 1161 1186 - -
Mepo3g04310 1709 MobiDBLite consensus disorder prediction 336 365 - -
Mepo3g04310 1709 SMART ultradead3 566 762 IPR014001 -
Mepo3g04310 1709 MobiDBLite consensus disorder prediction 27 71 - -
Mepo3g04310 1709 CDD CD1_tandem 363 443 - -
Mepo3g04310 1709 Gene3D - 480 532 - -
Mepo3g04310 1709 Pfam SNF2-related domain 589 858 IPR000330 GO:0005524|GO:0140658
Mepo3g04310 1709 Gene3D - 561 800 IPR038718 -
Mepo3g04310 1709 FunFam Photoperiod-independent early flowering 1 541 814 - -
Mepo3g04310 1709 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 794 1076 IPR027417 -
Mepo3g04310 1709 MobiDBLite consensus disorder prediction 141 165 - -
Mepo3g04310 1709 MobiDBLite consensus disorder prediction 250 270 - -
Mepo3g04310 1709 Gene3D - 801 1031 IPR027417 -
Mepo3g04310 1709 Pfam Helicase conserved C-terminal domain 887 1000 IPR001650 -
Mepo3g04310 1709 SMART chromo_7 476 535 IPR000953 -
Mepo3g04310 1709 SMART chromo_7 364 446 IPR000953 -
Mepo3g04310 1709 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 557 791 IPR027417 -
Mepo3g04310 1709 Pfam Chromo (CHRromatin Organisation MOdifier) domain 479 533 IPR023780 -
Mepo3g04310 1709 SUPERFAMILY Chromo domain-like 457 533 IPR016197 -
Mepo3g04310 1709 ProSiteProfiles Chromo and chromo shadow domain profile. 478 542 IPR000953 -
Mepo3g04310 1709 Gene3D - 1297 1412 - -
Mepo3g04310 1709 ProSiteProfiles Chromo and chromo shadow domain profile. 365 444 IPR000953 -
Mepo3g04310 1709 MobiDBLite consensus disorder prediction 310 335 - -
Mepo3g04310 1709 MobiDBLite consensus disorder prediction 72 119 - -
Mepo3g04310 1709 MobiDBLite consensus disorder prediction 217 233 - -
Mepo3g04310 1709 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 41 1606 - -
Mepo3g04310 1709 FunFam protein CHROMATIN REMODELING 5 isoform X2 480 532 - -
Mepo3g04310 1709 Coils Coil 1084 1111 - -
Mepo3g04310 1709 MobiDBLite consensus disorder prediction 1 26 - -
Mepo3g04310 1709 CDD SF2_C_SNF 877 1011 - -
Mepo3g04310 1709 MobiDBLite consensus disorder prediction 1631 1649 - -
Mepo3g04310 1709 SUPERFAMILY Chromo domain-like 362 445 IPR016197 -
Mepo3g04310 1709 MobiDBLite consensus disorder prediction 1 365 - -
Mepo3g04310 1709 SMART helicmild6 916 1000 IPR001650 -
Mepo3g04310 1709 MobiDBLite consensus disorder prediction 1655 1669 - -
Mepo3g04310 1709 Gene3D - 353 477 - -
Mepo3g04310 1709 MobiDBLite consensus disorder prediction 1590 1709 - -
Mepo3g04310 1709 MobiDBLite consensus disorder prediction 1159 1186 - -
Mepo3g04310 1709 MobiDBLite consensus disorder prediction 1687 1701 - -
Mepo3g04310 1709 SMART DUF4208_2 1472 1577 IPR025260 -
Mepo3g04310 1709 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 801 1031 - -
Mepo3g04310 1709 MobiDBLite consensus disorder prediction 1590 1630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04310 Mepo-Chr3 52345843 52364200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04310 592 1027 RAD5 or RAD16-like Gene Family AT1G02670 25.494 4.19e-35 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo3g04310 SNF2_N 1.3e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04310 K11367 - gmx:100808039 2620.5