Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04275 ATGAGTGACTCATTGGCAAGTGATAATAATCTTGGTGATTCCCCAGCCGTTGATATAACCGGCAAGATCATGGTGGTCATCATCATTCTTCTCTTCATGGTTATTGTTACTTTTCTTTTCTTCCATCTTTTTGCCAAGGGATTCTGGTGGACCCAGAGTCGGAGCAGTGACAACAATTCCCAATCCCGAAGGCGCCGGCGTAGTGGTCAAGAGGGTGGTGGTCTTGATCCTTCGGTACTCAACTCCCTACCCATATCAATATTCAATTCAAAAGAAGATGGTTTGGATTTGGAGTGTTCGGTTTGCCTGTCGGAAGTGGTTGAAGGAGAAAAGGTGAGGGTTTTGCCTAAATGCAATCACATGTTTCACATAGATTGCATTGATATGTGGTTCCATTCCCACTCAACCTGCCCTCTTTGCAGGACAACACTTGCTGCAACTCCTCCTCCTTCCTCAGTAGTAGTAGAAGTAGAATCATCAACATCTGCTGCTGCTGCTTTTCCCACAAATGTCTTGATTTGGGGCAACCACAACCAAATAACCTCTTTTTCTTCATCTACTACTTCGGAACAAAACACTTCTTCACCGTCATCCGATAGTGATAATACTATAAATAACAACAACAGACGTGATAATGAAGGAAATAGAATGTTAAGGATTGATATACCCAGTGAGTGTGAGGCCACTACTTCATCATCACCCTTAGCTTCGGCGGAAGGGAGATTAAAGTCATTAAAGAGGCTTTTGAGCAGCAGCAGCAGAGGCATAATGAGCCTGAATCCTTGGAGTCCCACTTCTACTGTCCAACAACAAACAAAGCCAAAGGAAGCAGCAGGACAAAGCTAG 846 0.4397 MSDSLASDNNLGDSPAVDITGKIMVVIIILLFMVIVTFLFFHLFAKGFWWTQSRSSDNNSQSRRRRRSGQEGGGLDPSVLNSLPISIFNSKEDGLDLECSVCLSEVVEGEKVRVLPKCNHMFHIDCIDMWFHSHSTCPLCRTTLAATPPPSSVVVEVESSTSAAAAFPTNVLIWGNHNQITSFSSSTTSEQNTSSPSSDSDNTINNNNRRDNEGNRMLRIDIPSECEATTSSSPLASAEGRLKSLKRLLSSSSRGIMSLNPWSPTSTVQQQTKPKEAAGQS 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04275 281 MobiDBLite consensus disorder prediction 183 211 - -
Mepo3g04275 281 SMART ring_2 99 140 IPR001841 -
Mepo3g04275 281 CDD RING-H2_EL5-like 98 141 - -
Mepo3g04275 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 146 IPR013083 -
Mepo3g04275 281 MobiDBLite consensus disorder prediction 253 281 - -
Mepo3g04275 281 MobiDBLite consensus disorder prediction 183 217 - -
Mepo3g04275 281 SUPERFAMILY RING/U-box 79 147 - -
Mepo3g04275 281 MobiDBLite consensus disorder prediction 53 78 - -
Mepo3g04275 281 FunFam RING-H2 finger protein ATL3 66 146 - -
Mepo3g04275 281 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Mepo3g04275 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 17 226 - -
Mepo3g04275 281 Pfam Ring finger domain 98 141 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04275 Mepo-Chr3 51768228 51769691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04275 8 271 Rapid Response to Elicitors AT3G16720 32.776 1.83e-39 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04275 - - mtr:25499753 394.815