Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04270 ATGACGATGATGGGCAACAACAGCAACAATGGATCACCATCACAGTTTGGGGACACAACGTTGACAAAAGTGTTCGTTGGAGGTCTTGCCTGGGAAACTCCGAAAGACACATTAAGAGAACACTTTGAAAAATACGGAGACATCCTTGAAGCTGTCATAATTTCTGATAAGGTTACCGGAAGATCCAAAGGGTATGGATTTGTAACATTCAAAGAAGCAGAGGCGGCAAAGAAGGCTTGCGAGGAACCAACTGTGATCATCAATGGTCGCCGAGCCAACTGCAATATCGCTTCTTTTGGTGCTCGCCGTCCAAGGTCTTCTCCCATCATCACTCCTCCTCCTTCCCCTCCTCCAAAGATCCACCGCAGCAACCAGCAGCAGGTTCAATGGTATTATCCGGTGGGAACACCCACACCTCCTTCCCCAATATTCCATCATCATCATCACGCCATTCCTTTCTACGGGTACACGCCCACGCCCACCTACATTGCAACAGATCATCATATGAATTACAATTACAACTACAACTACAATCAGAAACTGAGCTATGGAATGGGTGGGGGCTACGTGTACCCGCCGCCGAGGCAGGCTATTGTCGGTGCGATGCCGATCATGTACCACCACCACCCTGCTCCTGTCTATAGATCAACCGAGGCTATGGGTGTCCCTCCACCTCAAATATTCCACCCAACTCATCATTATGCCCCATCCATCACTCCTATTACAGGTCCAGTTGGCACGGGTGAATGCTTCAAAAGGGTAGTGGTCTGA 771 0.4916 MTMMGNNSNNGSPSQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKEAEAAKKACEEPTVIINGRRANCNIASFGARRPRSSPIITPPPSPPPKIHRSNQQQVQWYYPVGTPTPPSPIFHHHHHAIPFYGYTPTPTYIATDHHMNYNYNYNYNQKLSYGMGGGYVYPPPRQAIVGAMPIMYHHHPAPVYRSTEAMGVPPPQIFHPTHHYAPSITPITGPVGTGECFKRVVV 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04270 256 SMART rrm1_1 23 95 IPR000504 GO:0003723
Mepo3g04270 256 FunFam Putative RNA-binding protein ARP1 16 105 - -
Mepo3g04270 256 Gene3D - 4 108 IPR012677 -
Mepo3g04270 256 PANTHER BOULE-RELATED 9 234 - -
Mepo3g04270 256 MobiDBLite consensus disorder prediction 103 122 - -
Mepo3g04270 256 SUPERFAMILY RNA-binding domain, RBD 21 109 IPR035979 GO:0003676
Mepo3g04270 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 89 IPR000504 GO:0003723
Mepo3g04270 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 99 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04270 Mepo-Chr3 51723999 51725861 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04270 18 157 C2H2 Transcription Factor Family AT2G19380 30.921 6.92e-16 75.1