Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04265 ATGGAGGATGATTCCGATGCTGCCGCCGCCGCCGCTGGTGCCGCGAATAACAACAATAGGGTTTCTTCGTCAAACCCTTACTGGTTGGATGCCTGTGAGGATATTTCTATATCTTGTGATGATTTCATTGATTTTGATGTTTCTGATGACTCTGAACACCTTCAACAACAACCTAATAACAACAACAGCAACAACAATCAAGACTTTTTTGGTGGTATTGATCGAATCTTTGACAGCATCAAAAATGGCGCTGGTCTCCCTGATCATCCTCCTGTTTCTGCTTCTGCTGATGATGGGAATCAACTACCTCCTACTCATCTTCAACTAGAACAACAAAACCAACAAGTAGGAGAAGAAGAAGAAGAACAAGAAAGGTTCAACAAAAGGGCTCGCCTCACCGAAGGAGAAAGGAGAATCAATCATCAACCCAACAACAAGGACAGGTATGAGAGGTGTTTCAACAATAATAGGAAAAGACCAAGGAATAATAATAATAATCATAATCATTCTTTTAAAAGAGATGTCAAGGGTTACTGGGAGAGGGATAAGTCTTCTAATGACTTGGTCTTTCGCTCCGGAACTTGGGAACCCAATCTTCATACTCCCCAACACAAAATGGACATCGACAACCCCATCAAACAGGAAAAACCCAAGGAGACTGTTCCTGTTCCTGAGGAAAAAGCCAGACAGTATCAGTTGGATGTTCTTGAGCAGGCAAAGACCAGAAATACAATAGCTTTTCTAGAAACTGGAGCTGGCAAAACCCTCATTGCCGTTCTTCTCATTAAGTCTATACATGAGACATTACATCTCCAAAATAAGAAAATGCTTGCTGTGTTTTTGGTTCCAAAAGTTCCACTTGTTTACCAGCAAGCTGAGGTAATCCGCGAACGCACTGGATATCAAGTGGGGCACTATTGTGGAGAAATGGGGCAGGATTTCTGGGATGCTCGAAGGTGGCAGCGTGAATTTGACACCAAGCATGTTTTAGTCATGACCGCTCAAATACTTTTGAACATTTTGAGGCATAGCATCATAAAAATGGAAGCAATCAATCTCCTGATTCTTGACGAGTGCCATCATGCTGTGAAGAAACACCCATATTCGCTGGTGATGTCTGAGTTCTACCATACAACACCCAAAGAAAAGAGGCCATCTGTATTTGGAATGACTGCTTCTCCTGTTAACTTAAAGGGTGTTTCTAGCCAAGTAGACTGTGCAATAAAAATTCGTAATCTTGAAAGTAAGCTAGATTCAATAGTTTGTACCATTAAAGATCGTAAAGAGCTAGAGAAACACGTGCCTATGCCCTCTGAGATTGTGGTGGAGTATGATAAAGCGGCCAGTCTATGTTATTTACATGAGCAAATAAAGCAGATGGAGACTGAAGTTGAGGAAGCTGCAAAATCTAGTTCAAGAAGAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGAGCTAAGGAAGAGCTGCGCCAAGTTTATGGTGTTTCTGAAAGAACAGAAAGTGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTGTTAATTATGCACTTGGTGAATTGGGACAGTGGTGTGCATATAAGGTTGCACAATCTTTTCTTGCAGCTCTGCAAAATGATGAAAGGGCAAACTATCAACTTGATGTCAAGTTTCAGGAATCTTATCTGAGTAAAGTTGTGTCTCTTCTGAAATGTCAGCTGTCAGAGGGTGCCGTTTCTGACAAAAATGATGGAGTAGATGACTCAGAAAAGGATGCAGCTCACAGTGGGTCTGACGAACATGAAGAGATTGAAGAAGGAGAGCTTCCAGACAGTCACGTTGTCTCTGGTGGGGAGCATGTTGATGTCATAATAGGTGCTGCTGTGGCTGATGGCAAGGTGACCCCCAAGGTGCAGGCTTTAATCAAAATACTCCTCAAGTATCAGAACACAGACGACTTCCGCGCAATCATCTTTGTTGAACGTGTTGTGTCTGCATTAGTTCTACCCAAGGTTTTTGCCGAGCTTCCATCTCTTAGTTTTGTGAAGTGTGCAAGCTTGATTGGTCACAACAATAGTCAGGAAATGCGGACCCACCAAATGCATGATACAATTGCCAAGTTTCGTGATGGGAGGGTCACATTGTTAGTTGCCACTAGTGTTGCTGAAGAAGGACTTGATATCCGGCAATGTAACGTTGTTATTCGCTTTGATCTTGCGAAGACTGTTCTGGCATACATTCAGTCTAGGGGACGTGCGAGAAAGCCCGGGTCTGATTACATCCTAATGGTTGAGAGGGGAAATTTGTCACATGAAGCATTCCTTAAGAATGCCAGGAACAGTGAGGAAACATTGCGGAGAGAAGCAATAGAGAGAACAGACCTTAGTCATCTGAAAGACACATCAAGGTTGATTTCTGTAGATACCCATCCAGAAACAATTTACCAGGTGAAATCTACCGGTGCAGTAGTTAGCTTAAATTCTGCTGTAGGTCTTGTCCACTTCTATTGCTCTCAGCTACCTAGTGACAGATATTCAATTCTTCGTCCCGAGTTTATTATGGAGAAGCATGAAAACCCCGGGGGTCCCACTGAATATTCTTGCAGGCTTCAACTGCCATGTAATGCACCATTTGAAAATCTGGAGGGTCCTATCTGCAGTTCAATCCGCTTGGCACAACAGGCTGTTTGTCTAGCTGCTTGCAGAAAATTGCACGAAATGGGAGCATTCACTGACATGCTATTGCCGGATAAAGGAAGTGGGGGAGAAAAAGAAAAGGCTGAGCAAAATGATGAAGGGGATGCACTTCCAGGGACTGCTAGACATAGGGAGTTCTATCCTGAAGGTGTGGCTGACATACTGAAGGGAGAGTGGATCTTATCTGGAAAAGATGCTTGTAACAACTCCAAATTGCTTCATCTTTATATGTATACCATAAAGTGCGAGAATGTAGGCCATTCAAAGGATCCGTTCTTGACTCAGGTTTCAGATTTTGCAGTACTTTTTGGCACTGAACTGGATGCAGAGGTCTTATCGATGTCGATGGATCTATTTATCGCTCGAACCGTGACTACGAAGGCGTCTCTTGTCTTTAGAGAGTCAATAGATATCACTGAGAGTCAGTTGGCGTCCCTGAAAAGCTTTCATGTAAGGTTAATGAGCATTGTCTTGGATGTAGATGTTGAACCATCTACCACTCCTTGGGATCCTGCAAAAGCGTATCTGTTTGTCCCAATGGTTGGCGATAAGTCTTTAGATCCTATGAACCAAATTGACTGGCATCTGGTTGAGACAATAATTGGAGCTGATGCATGGAAAAATCCCCTCCAGAAGGCTCGACCAGATGTTTACCTTGGCACTAATGAGAGAACTTTAGGTGGTGATAGAAGGGAATACGGATTTGGGAAATTGCGTCATGGTTTGGCTTATGGGCAAAAATCACATCCAACCTATGGAATCAGAGGAGCTGTGGCCCAGTTTGATGTAGTGAAAGCTTCAGGATTGGTTCCCAACAGAGATTCCATGGAAACACAAAATCATATCAATATGACTACCAAAGGAAAATTGATGATGGCAGATACCTGTACCAGTCCAGATGATCTTGTAGGGAGAATTGTAACTGCTGCTCATTCAGGGAAGAGGTTTTATGTTGATTCTATACGCTATGAAATGACAGCAGAGAACTCTTTCCCTAGGAAAGAAGGTTATCTCGGTCCTCTGGAATACAGTTCATATGCTGATTACTACAAGCAAAAATATGGTGTTGATTTGGCTTACAAGCAACAACCTCTTATAAGAGGGCGTGGTGTATCATACTGCAAGAATCTTTTGTCCCCTCGATTTGAACACAGTGAAGGACATGAAGATGAAACTGAAGAGACCCACGACAAAACTTACTATGTTTTCCTTCCTCCAGAGCTATGCCTAGTACACCCACTGCCTGGATCACTCGTTCGTGGTGCTCAGAGGCTGCCTTCAATAATGAGGAGGGTTGAAAGCATGCTGCTTGCAGTTCAGCTTAAGAATATGATAAATTATCCTGTCCAGGCTTCAAAGATCTTGGAAGCCTTGACCGCTGCCTCTTGCCAGGAGACTTTCTGCTATGAAAGGGCAGAGCTTCTAGGAGATGCTTACCTGAAATGGGTTGTTAGTCGCTTTCTTTTCCTAAAACATCCACAGAAACATGAAGGCCAGCTTACTAGGATGAGACAACAAATGGTCAGTAACATGGTATTATATCAGTACGCATTAAGTAAAGGTCTTCAATCATATATCCTAGCAGATCGTTTTGCCCCATCCAGATGGGCAGCTCCTGGGGTGCTACCTGTCTTTGATGAGGATACAAAGGATGAGGAGTCATCTTTATTTGACCAGGAGCGTTCCATTTTTAAGACCGAGAGGATGGACAACACTGATGAATTTGAGGATGAAATGGAAGATGGTGAGCTTGAGAGTGATTCAAGTTCTTACCGAGTTCTGTCTAGCAAGACACTTGCAGATGTTGTGGAAGCACTGATTGGGGTATATTATGTTGAAGGTGGTAAGAATGCTGCTAACCACCTTATGAAATGGATTGGTATTCACATAGAGATCGATCCTGATGAGATGGAATGTATAACAAAGCCATCCAATGTTCCAGACAGCATACTTAGGAGTGTTGATTTTGATGCTTTAGAAGGTGCTCTAAATATTAAGTTTAAAGACAAGGGGCTGCTGATAGAATCCATAACTCATGCCTCCAGACCATCTTCAGGAGTATCCTGTTATCAGCGGTTGGAGTTTGTTGGAGATGCTGTCTTGGACCATCTTATAACCAGGCACTTATTTTTCTCGTACACAGATCTGCCACCAGGACGTCTGACTGACCTTCGAGCTGCTGCTGTAAACAATGAAAATTTTGCACGTGTTACAGTCAAACACAATCTTCACCTGCATCTGCGACATGGGTCCAGTGCCCTAGAAAAACAGATTAAAGATTTTGTGAAGGAAGTTCAAGATGAATTGTCAAAACCAGGGTTTAACTCTTTTGGTCTTGGAGATTGCAAAGCTCCCAAGGTCCTTGGTGACATCCTTGAATCTATTGCTGGTGCCATTTTTCTTGACAGTGGGAGGAATACTGCTGTTGTTTGGAAGGTTTTTCAGCCTCTTTTGCATCCTATGGTTACACCCGAGACTTTGCCAATGCATCCTGTGCGTGAGCTTCAAGAGCGATGCCAGCAGCAGGCTGAAGGCTTGGAGTATAGAGCAAGTCGTGCTGGAAATTTAGCCACTGTTGAAGTATTCATTGATGGGGTACAAATAGGGGCTGCTCAAAATCCACAGAAGAAAATGGCACAGAAATTAGCTGCCCGAAATGCCCTTGCTGCTTTGAAAGAGAAGGAAGAGAGTAAAATTCAGGAGAAAAATGATGAAAAGGAGACAAAGAATGGGAACCAGACATTTACTAGACAAACATTAAATGATATATGTTTGCGGAGAAACTGGCCTATGCCATTCTACAGGTGTGTGAGTGAGGGTGGTCCTGCACATGCAAAGAGGTTTACATTTGCAGTGCGAGTGAATACTACTGATAAAGGCTGGACGGATGAATGTGTTGGAGAGGCAATGCCAAGCGTCAAGAAGGCCAAAGACTCAGCTGCTGTTCTTCTCTTGGAACTAATAAACAAATTATACTCGTCATAG 5667 0.4309 MEDDSDAAAAAAGAANNNNRVSSSNPYWLDACEDISISCDDFIDFDVSDDSEHLQQQPNNNNSNNNQDFFGGIDRIFDSIKNGAGLPDHPPVSASADDGNQLPPTHLQLEQQNQQVGEEEEEQERFNKRARLTEGERRINHQPNNKDRYERCFNNNRKRPRNNNNNHNHSFKRDVKGYWERDKSSNDLVFRSGTWEPNLHTPQHKMDIDNPIKQEKPKETVPVPEEKARQYQLDVLEQAKTRNTIAFLETGAGKTLIAVLLIKSIHETLHLQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEIVVEYDKAASLCYLHEQIKQMETEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAVNYALGELGQWCAYKVAQSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAVSDKNDGVDDSEKDAAHSGSDEHEEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQNTDDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTHQMHDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLKNARNSEETLRREAIERTDLSHLKDTSRLISVDTHPETIYQVKSTGAVVSLNSAVGLVHFYCSQLPSDRYSILRPEFIMEKHENPGGPTEYSCRLQLPCNAPFENLEGPICSSIRLAQQAVCLAACRKLHEMGAFTDMLLPDKGSGGEKEKAEQNDEGDALPGTARHREFYPEGVADILKGEWILSGKDACNNSKLLHLYMYTIKCENVGHSKDPFLTQVSDFAVLFGTELDAEVLSMSMDLFIARTVTTKASLVFRESIDITESQLASLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPMVGDKSLDPMNQIDWHLVETIIGADAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGLAYGQKSHPTYGIRGAVAQFDVVKASGLVPNRDSMETQNHINMTTKGKLMMADTCTSPDDLVGRIVTAAHSGKRFYVDSIRYEMTAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLAYKQQPLIRGRGVSYCKNLLSPRFEHSEGHEDETEETHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKNMINYPVQASKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKHPQKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYILADRFAPSRWAAPGVLPVFDEDTKDEESSLFDQERSIFKTERMDNTDEFEDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIHIEIDPDEMECITKPSNVPDSILRSVDFDALEGALNIKFKDKGLLIESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFSYTDLPPGRLTDLRAAAVNNENFARVTVKHNLHLHLRHGSSALEKQIKDFVKEVQDELSKPGFNSFGLGDCKAPKVLGDILESIAGAIFLDSGRNTAVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYRASRAGNLATVEVFIDGVQIGAAQNPQKKMAQKLAARNALAALKEKEESKIQEKNDEKETKNGNQTFTRQTLNDICLRRNWPMPFYRCVSEGGPAHAKRFTFAVRVNTTDKGWTDECVGEAMPSVKKAKDSAAVLLLELINKLYSS 1888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04265 1888 Coils Coil 109 129 - -
Mepo3g04265 1888 Gene3D Ribonuclease III domain 1545 1719 IPR036389 GO:0004525|GO:0006396
Mepo3g04265 1888 CDD SF2_C_dicer 629 759 - -
Mepo3g04265 1888 SMART DRBM_3 1810 1883 IPR014720 -
Mepo3g04265 1888 SMART DRBM_3 1725 1786 IPR014720 -
Mepo3g04265 1888 MobiDBLite consensus disorder prediction 98 114 - -
Mepo3g04265 1888 PANTHER DICER-RELATED 1180 1791 - -
Mepo3g04265 1888 SMART ultradead3 224 427 IPR014001 -
Mepo3g04265 1888 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 635 796 IPR001650 -
Mepo3g04265 1888 SUPERFAMILY RNase III domain-like 1323 1527 IPR036389 GO:0004525|GO:0006396
Mepo3g04265 1888 MobiDBLite consensus disorder prediction 574 608 - -
Mepo3g04265 1888 Gene3D Dicer dimerisation domain 819 921 IPR038248 -
Mepo3g04265 1888 Pfam Helicase conserved C-terminal domain 632 749 IPR001650 -
Mepo3g04265 1888 Gene3D - 223 467 IPR027417 -
Mepo3g04265 1888 ProSiteProfiles PAZ domain profile. 1167 1307 IPR003100 GO:0005515
Mepo3g04265 1888 Gene3D - 622 788 IPR027417 -
Mepo3g04265 1888 FunFam Endoribonuclease dicer-like 1 819 920 - -
Mepo3g04265 1888 FunFam endoribonuclease Dicer homolog 1 1815 1884 - -
Mepo3g04265 1888 CDD DEXHc_dicer 227 426 - -
Mepo3g04265 1888 ProSiteProfiles Ribonuclease III family domain profile. 1350 1509 IPR000999 GO:0004525|GO:0006396
Mepo3g04265 1888 Pfam Type III restriction enzyme, res subunit 237 394 IPR006935 GO:0003677|GO:0005524|GO:0016787
Mepo3g04265 1888 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 235 412 IPR014001 -
Mepo3g04265 1888 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1809 1880 - -
Mepo3g04265 1888 CDD DSRM_DCL_plant 1815 1884 - -
Mepo3g04265 1888 FunFam Endoribonuclease Dicer 1 1187 1305 - -
Mepo3g04265 1888 CDD RIBOc 1346 1525 IPR000999 GO:0004525|GO:0006396
Mepo3g04265 1888 MobiDBLite consensus disorder prediction 910 934 - -
Mepo3g04265 1888 Pfam Ribonuclease III domain 1585 1698 IPR000999 GO:0004525|GO:0006396
Mepo3g04265 1888 Pfam Ribonuclease III domain 1364 1509 IPR000999 GO:0004525|GO:0006396
Mepo3g04265 1888 MobiDBLite consensus disorder prediction 1 26 - -
Mepo3g04265 1888 Pfam PAZ domain 1192 1327 IPR003100 GO:0005515
Mepo3g04265 1888 SMART helicmild6 665 751 IPR001650 -
Mepo3g04265 1888 ProSitePatterns Ribonuclease III family signature. 1585 1593 IPR000999 GO:0004525|GO:0006396
Mepo3g04265 1888 SMART riboneu5 1565 1721 IPR000999 GO:0004525|GO:0006396
Mepo3g04265 1888 SMART riboneu5 1346 1528 IPR000999 GO:0004525|GO:0006396
Mepo3g04265 1888 ProSiteProfiles Ribonuclease III family domain profile. 1550 1698 IPR000999 GO:0004525|GO:0006396
Mepo3g04265 1888 MobiDBLite consensus disorder prediction 52 70 - -
Mepo3g04265 1888 FunFam Endoribonuclease dicer-like 1 623 785 - -
Mepo3g04265 1888 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1724 1787 IPR014720 -
Mepo3g04265 1888 Pfam Dicer dimerisation domain 824 912 - -
Mepo3g04265 1888 Gene3D paz domain 1172 1313 - -
Mepo3g04265 1888 MobiDBLite consensus disorder prediction 913 934 - -
Mepo3g04265 1888 MobiDBLite consensus disorder prediction 118 157 - -
Mepo3g04265 1888 CDD RIBOc 1566 1721 IPR000999 GO:0004525|GO:0006396
Mepo3g04265 1888 FunFam Endoribonuclease dicer-like protein 1329 1521 - -
Mepo3g04265 1888 SUPERFAMILY RNase III domain-like 1549 1719 IPR036389 GO:0004525|GO:0006396
Mepo3g04265 1888 SUPERFAMILY dsRNA-binding domain-like 1813 1882 - -
Mepo3g04265 1888 FunFam Endoribonuclease dicer-like 1 1545 1719 - -
Mepo3g04265 1888 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 762 IPR027417 -
Mepo3g04265 1888 Gene3D Ribonuclease III domain 1332 1526 IPR036389 GO:0004525|GO:0006396
Mepo3g04265 1888 SUPERFAMILY dsRNA-binding domain-like 1680 1806 - -
Mepo3g04265 1888 FunFam Endoribonuclease dicer-like protein 223 463 - -
Mepo3g04265 1888 SUPERFAMILY PAZ domain 1190 1307 IPR036085 GO:0005515
Mepo3g04265 1888 Gene3D - 1722 1799 - -
Mepo3g04265 1888 MobiDBLite consensus disorder prediction 576 608 - -
Mepo3g04265 1888 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1809 1884 IPR014720 -
Mepo3g04265 1888 Coils Coil 1779 1806 - -
Mepo3g04265 1888 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 824 919 IPR005034 GO:0016891
Mepo3g04265 1888 Gene3D - 1815 1884 - -
Mepo3g04265 1888 SMART PAZ_2_a_3 1167 1331 IPR003100 GO:0005515
Mepo3g04265 1888 MobiDBLite consensus disorder prediction 50 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04265 Mepo-Chr3 51603481 51613409 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04265 648 791 Eukaryotic Initiation Factors Gene Family AT5G11200 28.571 6.37e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04265 K11592 - gmx:100811631 3133.2