Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04257 ATGGGTGATCACAACAATAAGTTTGTTCCTCCCACGATGCTTAGGGTCTTACTCGTTGAACCTGATGATTCTACTCGCCACATTATTTCTGCACTTCTTCGCAACTGCGGCTACAAAGTTGCAGCATTTCGTGATGGGTTAAAGGCATGGGAAACATTAAAGAATAAATCACTTGACATAGATCTCGTATTAACAGAAGTCGATCTCCCATCAATCTCTGGTTTTGAACTACTTACCCAAATCATGGACCATCACTATTGCAAAAACATTCCTCTCATAATGATGTCTTCTCAAGACTCAGTTAGCACTGTCTTCAAATGCATGCTCAACGGGGCTGTTGATTTTCTCATTAAACCAGTTCGCAGGAATGAGCTTAGGAACTTGTGGCAGCATGTCTGGAGAAGACAATATTCTTCTACTTCTACTATTACCATGCCTCCTCAAAATATACTTCATGTTGCTGCAACCAATCATTCTACTGCTTCTGTGCCTTCCACGCACAAAAATGAAACTGGAGACAAATCAACTACAATAGCATCTAAAGCTGCTGGGTGTGACAAAATTTCAACAGGTTTAAAGCTTGGTCAAAACTATGATTATAGTGAAACAAAAAACCTTGATCAAGTGTTAGGAACAGAGTTAAGCAAATCCAATCCTCATATTAGTGCAAAGATTCTTCAAAGCAATAATGAACTAGAAGACCATTCTGCTGGAGCTATTGACTTGATGGCTACTTTTGATAAACTTCCAAAGAGCAGTCATGCAAATTGTAGTTTCAGTGGCGGTAATACCACCAAGTTTGATTTTGATACACGATTTGAACTTTCTTTACAAAGAGATTCTCCTGGCAGCTCACCTACACCTACCACTGAAGAAAGGCAAATATTGAATCATTCAAATGATTCTGCGTTTTCTTGGTATGGCAGCAGTATGGTGTTGCAGCCTTTATTTCCAACAGAGAGTTCTCATGAATCACAAAAATTATCTGAAAATATAAATACTACTCATCAGTATGATGGAAAAAAACAACAGCAGGAAAATATCACATATCTGGTGATTGGTCAGTCTGGGCAAGTTGATACAAAATGTCAACTTGAATGCTTTCCAGCCACCGGGGCCACTTCCGATAATAAGTCTATAGAACATGATAACGTTTTACATTCGATGTTCAACGCACAATTAGGCATGCATCCTACTTGGACACCAAAATCAGTGTTCCAAAAAGAGAGTTCTCCATTTCCCACAAGTATTTCCTCCCATTCCAATCCTAAAAGTCAGAACTCAGAACCTCATCACTGGTCGGATGATGCCACCTATACTTGCGATCAAAGCAATAATGATTGTGCTATGCATGACTCTCCATCTAATGGTCAAAGTTGTACTAGTTTTTACCATGATGCGGAGAGTCATAACGACAGTGGTGTGTGTGAAGGCCTAGGCAGCGTAAGTGATGGAAATGCCCCTTCAGCTATTGTAGGCAAGAACAACCTTGAAAGTTCTATGAATAATGATCACCATGACGGGCTTAGAGAAACAAGTTCTCATCGCACCAGCCAAAGAGAAGCAGCTCTAACAAAGTTTCGACTGAAGCGAAAAGACAGATGCTATGACAAAAAGGTCCGATATGAAAGCCGGAAAAGACAGGCAGAGAACCGCCCCCGGGTGAAAGGGCAGTTTGTTCGCCAGGTACAGGGTGAACTTCCGGTAGCTGAAACCAGAGGATACTGA 1728 0.4086 MGDHNNKFVPPTMLRVLLVEPDDSTRHIISALLRNCGYKVAAFRDGLKAWETLKNKSLDIDLVLTEVDLPSISGFELLTQIMDHHYCKNIPLIMMSSQDSVSTVFKCMLNGAVDFLIKPVRRNELRNLWQHVWRRQYSSTSTITMPPQNILHVAATNHSTASVPSTHKNETGDKSTTIASKAAGCDKISTGLKLGQNYDYSETKNLDQVLGTELSKSNPHISAKILQSNNELEDHSAGAIDLMATFDKLPKSSHANCSFSGGNTTKFDFDTRFELSLQRDSPGSSPTPTTEERQILNHSNDSAFSWYGSSMVLQPLFPTESSHESQKLSENINTTHQYDGKKQQQENITYLVIGQSGQVDTKCQLECFPATGATSDNKSIEHDNVLHSMFNAQLGMHPTWTPKSVFQKESSPFPTSISSHSNPKSQNSEPHHWSDDATYTCDQSNNDCAMHDSPSNGQSCTSFYHDAESHNDSGVCEGLGSVSDGNAPSAIVGKNNLESSMNNDHHDGLRETSSHRTSQREAALTKFRLKRKDRCYDKKVRYESRKRQAENRPRVKGQFVRQVQGELPVAETRGY 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04257 575 Coils Coil 532 552 - -
Mepo3g04257 575 MobiDBLite consensus disorder prediction 500 522 - -
Mepo3g04257 575 Gene3D - 14 190 - -
Mepo3g04257 575 ProSiteProfiles Response regulatory domain profile. 15 133 IPR001789 GO:0000160
Mepo3g04257 575 SUPERFAMILY CheY-like 12 145 IPR011006 -
Mepo3g04257 575 SMART REC_2 14 129 IPR001789 GO:0000160
Mepo3g04257 575 MobiDBLite consensus disorder prediction 487 522 - -
Mepo3g04257 575 Pfam Response regulator receiver domain 16 127 IPR001789 GO:0000160
Mepo3g04257 575 Pfam CCT motif 520 562 IPR010402 GO:0005515
Mepo3g04257 575 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 201 IPR045279 GO:0009736
Mepo3g04257 575 ProSiteProfiles CCT domain profile. 520 562 IPR010402 GO:0005515
Mepo3g04257 575 MobiDBLite consensus disorder prediction 402 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04257 Mepo-Chr3 51532447 51535865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04257 7 564 Response Regulator Gene Family AT5G24470 38.298 9.60e-91 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Mepo3g04257 Response_reg 1.7e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04257 K12130 - gmx:100779346 446.817