Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04250 ATGTCAGAAGGTGCAGAGATCGATGAGCGTGTTGACCTCGACGAGGAAAATTATATGGAAGAGATGGACGATGATGTTGAGGAACAGATAGATGACGATGGAGTGGATGGAGGTGAAGATGAAAATGCTGAAGGTAGTGTTGAAGAACATGAATATGAGGAGACAGCAGCAGAGGCTGGTCAGAAAGACCTATTTCCCGAAGGAGAAAAAAGTGACCTTGGCGCTGAAGAAGATGAGCATAAACCAGCTCTCCTTGATGAAGAGGAGAGAGAGAAGCATGATGAACTTCTTTCCCGTCCTCCTCATGGGTCTGAAGTCTTTATTGGCGGACTTCCTCGGGATACATGTGACGATGATGTCAGGGAATTGTGTGAGCCCATGGGTGATATTGTTGAGATTAAATTAATCAAAGACAGGGAGACTGGAGAAAGCAAGGGTTATGCTTTCGTGGGTTATAAAACAAAGGAGGTGGCACAGAAGGCCATCGATGATATACACAACAAGGAATTTAAGGGAAAAACTTTGAGGTGTTTGCTGTCTGAAACCAAACACAGGTTATTCATTGGCAACATTCCAAAAACATGGACAGAGGATGAGTTTAGGAAAGCCGTTGAGGGTGTTGGTCCCGGAGTTGAAAGCATTGATCTCATAAAGGACCCTCAAAATCAAAGCAGAAATCGTGGGTTTGCTTTTGTTTTGTATTACAACAACGCATGTGCTGATTATTCACGACAAAAGATGTCAAGTGTGGGTTTCAAGCTAGACGGTATCACACCCACTGTCACATGGGCTGACCCAAAGACCTCACCTGACCAGTCTGCTGCTGCTTCACAGGTTAAAGCTCTATATGTGAAAAACATACCTGAGAATGTTACTACTGAACAACTAAAGGAGCTATTTCGTCGTCATGGGGAAGTAACGAAAGTGGTTATGCCACCTGGCAAAGCTTCAGGGAAACGTGATTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGAGACGGAGAAATATGAAATTGATGGCCAAGCTCTTGAAGTTGTTATTGCGAAGCCTCAGGCTGAAAAAAAACCTGATGGAGGCTATGCGTACAATCCTGGACTCCATCCTAACCATCTTCCACATCCTGGTTATGGTAACTTCTCTGGAAATCTTTATGGCTCTGTAGGGGCTGGATATGGTGTTGCTGCTGCTGCTGCTTATCAACAGCCAATGATATATGGTAGGGGTCCAATGCCAGCAGGAATGCAGATGGTTCCAATGGTTTTACCAGATGGTCGAATTGGCTATGTCCTTCAACAGCCTGGTGTACAGGTGCCAGGTCCCCGACCCCGTAGAAATGACCGGGGAAATGGTCCAGGCGGGCGTGGAGGAGGCAGTGGTAATGATGATGGAAATCGTAATAGAAGGTATCGACCCTATTAG 1440 0.4521 MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSVEEHEYEETAAEAGQKDLFPEGEKSDLGAEEDEHKPALLDEEEREKHDELLSRPPHGSEVFIGGLPRDTCDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRCLLSETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADYSRQKMSSVGFKLDGITPTVTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIAKPQAEKKPDGGYAYNPGLHPNHLPHPGYGNFSGNLYGSVGAGYGVAAAAAYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQVPGPRPRRNDRGNGPGGRGGGSGNDDGNRNRRYRPY 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04250 479 MobiDBLite consensus disorder prediction 8 48 - -
Mepo3g04250 479 MobiDBLite consensus disorder prediction 49 100 - -
Mepo3g04250 479 Gene3D - 267 385 IPR012677 -
Mepo3g04250 479 MobiDBLite consensus disorder prediction 439 479 - -
Mepo3g04250 479 MobiDBLite consensus disorder prediction 1 110 - -
Mepo3g04250 479 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 8 184 - -
Mepo3g04250 479 ProSitePatterns EF-hand calcium-binding domain. 40 52 IPR018247 -
Mepo3g04250 479 Gene3D - 185 265 IPR012677 -
Mepo3g04250 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 266 IPR000504 GO:0003723
Mepo3g04250 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 182 IPR000504 GO:0003723
Mepo3g04250 479 SUPERFAMILY RNA-binding domain, RBD 184 359 IPR035979 GO:0003676
Mepo3g04250 479 SMART rrm1_1 281 353 IPR000504 GO:0003723
Mepo3g04250 479 SMART rrm1_1 185 262 IPR000504 GO:0003723
Mepo3g04250 479 SMART rrm1_1 105 178 IPR000504 GO:0003723
Mepo3g04250 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 280 357 IPR000504 GO:0003723
Mepo3g04250 479 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 12 467 - -
Mepo3g04250 479 SUPERFAMILY RNA-binding domain, RBD 94 183 IPR035979 GO:0003676
Mepo3g04250 479 Gene3D - 9 184 IPR012677 -
Mepo3g04250 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 176 IPR000504 GO:0003723
Mepo3g04250 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 248 IPR000504 GO:0003723
Mepo3g04250 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 350 IPR000504 GO:0003723
Mepo3g04250 479 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 185 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04250 Mepo-Chr3 51467092 51473044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04250 104 364 Eukaryotic Initiation Factors Gene Family AT1G71770 20.879 1.31e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04250 K13161 - gmx:100790907 684.871