Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04246 ATGTCGCTCGGAGAAACTGCTTGCTCATACGCCCTTCTAATCCTTGAAGATGACAACATTCCAGCAACTGCTGACAACATCACCACTCTGTTGAAATCCGCAAAGGTTGATGTTGAATCATTCTGGCCCGCTTTATTCGCTAAACTTGCTGAGAAGAAAAATATTAGAGATTTGATTGCCAGTGCTGCTGGAGGTGGTGCTCCAGGAGCAGCTGTTGCGGCTGCTCCAGTTGCAGCATCAGGTGGTGGTGGCGGGGCTGCTCCAGCTGCTGCCGAGAAGAAGCCAGAGCCAGAGGAAGAAGAGAGTGATGAGGAAATGGGATTCGGCTTGTTCGATGAATAG 342 0.5029 MSLGETACSYALLILEDDNIPATADNITTLLKSAKVDVESFWPALFAKLAEKKNIRDLIASAAGGGAPGAAVAAAPVAASGGGGGAAPAAAEKKPEPEEEESDEEMGFGLFDE 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04246 113 MobiDBLite consensus disorder prediction 97 113 - -
Mepo3g04246 113 Pfam 60s Acidic ribosomal protein 23 111 - -
Mepo3g04246 113 CDD Ribosomal_P1 5 59 - -
Mepo3g04246 113 Gene3D - 1 62 IPR038716 -
Mepo3g04246 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 112 - -
Mepo3g04246 113 MobiDBLite consensus disorder prediction 78 113 - -
Mepo3g04246 113 Hamap 50S ribosomal protein L12 [rpl12]. 6 112 IPR027534 GO:0003735|GO:0005840|GO:0006414
Mepo3g04246 113 FunFam 60S acidic ribosomal protein P1 1 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04246 Mepo-Chr3 51434894 51435698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04246 1 112 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 48.214 1.47e-30 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04246 K02942 - gmx:100791962 105.145