Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04236 ATGGCTCTCGATTCATTGACATCTGGTCCTGCTTCGGATGCTATTTCTCTAATTATAGATACCGTTTCCGAGATTGTATGTTCTGCTGGTGGTGTCCTTGTGAATAAGGATAGTTTTAAGGAACTTGCAGCTTACTTGCAAAGAATTGCGCCTATCTTAAAACAGTTGAGCAAAGAAAAGGTCAGTGATTCTGAGACATTCAACTACGCTATTGAGGTTCTGGATCGTGAAATCAAAGATGGAAAGAAATTGGTTCAAGAATGTAGCAAGAAGAGCAAGGTATATCTTCTTGTGAATTGCAGAACCGTTTTTAAGCGCTTGAAGCACAACACAAGCGAGATTAGCAGGGCACTTGGTCTTCTTCCTTTGGCTACATCAGGCCTTTCTGCCGGAATAATTGAAGAAATCAAAAGGTTATGTGACAATATGCAGGCAGCTGAATTTAAGGCAGACATATCTGAGGAAGAGATATTAGAGAAAATCGAGTCAGCGATACAGGAAAAGAATTTCGACCGCTCCTATGCAAATAATTTGCTTCTTCTCATTGCAGATGCTGTTGGAATTACAAAAGAGCGGTCAACACTAAGAAAAGAGCTTGAAGAGTTTAAAAGTGAAATTGAAAATGAGAAAGACCGGGCTGAAGCCATACAAATGGATCAAATTATTGCTCTGTTGGAAAGGTCTGATGCAGCCTCATCAACTAGGGAAAAGGAACTCAAGTACATCGCCAAACGAGATTCTTTGGGTACTCAACCGTTGGAGCCTTTACAGTCCTTTTATTGCCCCATTATGGGTGATGTTATGGTTGACCCTGTGGAAACTTCATCAGGGCAAACATTTGAGAAAAGTGCAATTGAAAAGTGGTTTGCTGAAGGAAACCAATTGTGTCCTCTGACTTTCATTACTTTAGACACGTTGATTTTGAGACCTAACAAAACCTTGAAACAATCAATAGAAGAATGGAAAGATAGAAATGCAATGATCACAATTGCTTCAATGAGAGAGAAAATCCAGTCTGGAGATGAAGTTGGAGTATTACATTGTCTGCAAGCTCTTCAAGATTTGTGTGAACAAAAGGATCAGCATAGAGAATGGGTGGTACTGGAGAATTATATACCTGTTCTTATCCAAATTCTTGCTGAGAAAAACCGTGATATAAGAAATCACGTCCTTGTCATCCTTTGCATGCTGGTGAAGGATAATGAAGATGCCAAGGAAAGAATTGCAAATGTTGATAATGCAATTGAGTCTATTGTCCGTTCTCTTGGGCGTCGTTTGGGGGAAAGGAAGTTGGCGGTGGCATTACTTCTGGAACTATCCGAATATAATTTGTTAAGAGAATACATTGGAAAAGTTCAAGGTTGCATACTACTATTGGTGACTATGTCTAGCAGTGAGGATAATCAAGCTGCAAGAGATGCAACAGAGTTACTGGAGAAACTTTCATCCTCTGATCAGAATGTTATACAGATGGCAAAAGCAAATTATTTCAAGCATTTATTGCAGCGCCTCTCCGCAGGACCAGATGATGTGAAGATGATTATGGTCAAAATGTTAGCAGAAATGGAGTCAACAGACCACAATAAGGAGATCTTATTTGACAGTGGTATTCTGCCTCCTCTTCTTCGCTTGGTCTCACATAATGATGTTGAGATGAAATTTGTTGCCCTTAAAGCTCTTCAGAATCTATCTACTTTAAAGAAAAATGGACTTGAAATGATTCGACAAGGTGCAGCACGCAAACTATTTGGCATTCTTTTCCAGCATAGCCTTCCTTCCTCAAGTTTGTCTGAACATGTAGCTCCCATAATTATGCAACTTGCTGCATCTACCATCTCCCAGGATACACAGACACCGGTTTCATTGTTAGAGTCCGATGAAGATGTTTTTAACCTTTTTTCTCTAGTTAGCTACACAGTGCCTGATGTGCGACAATATATTATCCAGACATTTTATTCCTTATGTCACTCGCCCTCAGCTTCATATATCAGGAACAAGCTAAGAGAGTGCCCATCAGTTCTAGTATTGGTCAAATTGTTTGAGAATGAAAGCCTAAGTCTTCGAGCAAGTGCTGTGAAGTTGTTTTCTTGCCTGGTAGAAAGTTGTGATGAAGACGCCGTACTAAAGCATGTGAATCAGAAGTGTATTGAGACTTTACTCCAGATGCTGAAATCTTCATCTGACAAAGAAGAAATTGTTTCTGCTATGGGAATAATACGATATCTTCCAAAAGTTCAACAGATCACTCAGTGGCTTTATGATGCCGGGGCACTGTCAATCATTTGTAAATATGTCCAAGAAGGCACGGATAAAGATCTCCAAAAGAGTAAGTTGGTAGAAAATTCTGTTGGTGCATTATGTCGTTTTACAGTTCCAACAAACTTGGAATGGCAAAAGAGTGCAGCCGAAATTGGGATCATAACTGTTTTAGTACAGTTGCTTGAAAGTGGAACTGCTCAAACAAAACAGCTAGCAGCGCTGTCCCTAACTCAATTTTCTAAAAGCTCAAATGAACTGAGCAGTCCAATGCCAAAGCGCAAGGGATTTTGGTGCTTCTCAGCTCAAACAGAAGCCGGATGCTTAGTTCATGGTGGTGTCTGCACCGTGGAATCATCATTTTGCCTATTGGAGGCTGATGCGGTGGGAGCACTAGCAAAGACTCTTGGGGACTCTGATCTTGGAGTGTGTGAGACTTCTTTAGATGCTCTTCTAACTTTAATTGATGGGGAAAAGCTACAGAGTGGTAGTAAAGTGCTTGCAGATGAAAATGTCATACCACTAATAATAAGATTTCTCGGTTCCCCTTCTCCCGGATTGCAGGAAAAGTCTCTTAATGCTTTGGAGAGGATTTTCCGGCTATTAGAGTTCAAACAGAAATATGGATCTTCAGCTCAAATGCCTTTGGTTGACTTAACTCAGCGGGGTAATGGTAGCATTAAATCCTTGGCAGCTCGAATATTGGCACATTTGAACGTGCTTCATGATCAATCTTCATATTTCTAA 3003 0.4029 MALDSLTSGPASDAISLIIDTVSEIVCSAGGVLVNKDSFKELAAYLQRIAPILKQLSKEKVSDSETFNYAIEVLDREIKDGKKLVQECSKKSKVYLLVNCRTVFKRLKHNTSEISRALGLLPLATSGLSAGIIEEIKRLCDNMQAAEFKADISEEEILEKIESAIQEKNFDRSYANNLLLLIADAVGITKERSTLRKELEEFKSEIENEKDRAEAIQMDQIIALLERSDAASSTREKELKYIAKRDSLGTQPLEPLQSFYCPIMGDVMVDPVETSSGQTFEKSAIEKWFAEGNQLCPLTFITLDTLILRPNKTLKQSIEEWKDRNAMITIASMREKIQSGDEVGVLHCLQALQDLCEQKDQHREWVVLENYIPVLIQILAEKNRDIRNHVLVILCMLVKDNEDAKERIANVDNAIESIVRSLGRRLGERKLAVALLLELSEYNLLREYIGKVQGCILLLVTMSSSEDNQAARDATELLEKLSSSDQNVIQMAKANYFKHLLQRLSAGPDDVKMIMVKMLAEMESTDHNKEILFDSGILPPLLRLVSHNDVEMKFVALKALQNLSTLKKNGLEMIRQGAARKLFGILFQHSLPSSSLSEHVAPIIMQLAASTISQDTQTPVSLLESDEDVFNLFSLVSYTVPDVRQYIIQTFYSLCHSPSASYIRNKLRECPSVLVLVKLFENESLSLRASAVKLFSCLVESCDEDAVLKHVNQKCIETLLQMLKSSSDKEEIVSAMGIIRYLPKVQQITQWLYDAGALSIICKYVQEGTDKDLQKSKLVENSVGALCRFTVPTNLEWQKSAAEIGIITVLVQLLESGTAQTKQLAALSLTQFSKSSNELSSPMPKRKGFWCFSAQTEAGCLVHGGVCTVESSFCLLEADAVGALAKTLGDSDLGVCETSLDALLTLIDGEKLQSGSKVLADENVIPLIIRFLGSPSPGLQEKSLNALERIFRLLEFKQKYGSSAQMPLVDLTQRGNGSIKSLAARILAHLNVLHDQSSYF 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04236 1000 Pfam U-box domain 259 325 IPR003613 GO:0004842|GO:0016567
Mepo3g04236 1000 SUPERFAMILY ARM repeat 330 990 IPR016024 -
Mepo3g04236 1000 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Mepo3g04236 1000 Pfam Armadillo/beta-catenin-like repeat 525 564 IPR000225 GO:0005515
Mepo3g04236 1000 Coils Coil 185 219 - -
Mepo3g04236 1000 Gene3D - 857 998 IPR011989 -
Mepo3g04236 1000 CDD RING-Ubox_PUB 259 299 IPR045210 -
Mepo3g04236 1000 Coils Coil 136 156 - -
Mepo3g04236 1000 Gene3D - 11 126 IPR036537 GO:0007166
Mepo3g04236 1000 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 335 IPR013083 -
Mepo3g04236 1000 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 536 578 IPR000225 GO:0005515
Mepo3g04236 1000 Gene3D - 336 615 IPR011989 -
Mepo3g04236 1000 Coils Coil 401 421 - -
Mepo3g04236 1000 CDD MLKL_NTD 18 126 - -
Mepo3g04236 1000 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 12 1000 - -
Mepo3g04236 1000 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Mepo3g04236 1000 SMART arm_5 703 741 IPR000225 GO:0005515
Mepo3g04236 1000 SMART arm_5 525 565 IPR000225 GO:0005515
Mepo3g04236 1000 SMART arm_5 912 952 IPR000225 GO:0005515
Mepo3g04236 1000 SMART arm_5 744 791 IPR000225 GO:0005515
Mepo3g04236 1000 SMART arm_5 359 399 IPR000225 GO:0005515
Mepo3g04236 1000 SMART arm_5 401 441 IPR000225 GO:0005515
Mepo3g04236 1000 SMART arm_5 868 908 IPR000225 GO:0005515
Mepo3g04236 1000 Gene3D - 616 852 IPR011989 -
Mepo3g04236 1000 SUPERFAMILY RING/U-box 246 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04236 Mepo-Chr3 51363034 51368209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04236 257 1000 U-box Gene Family AT1G76390 27.250 1.28e-54 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04236 - - gmx:100799969 1374.38