Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04230 ATGAATGCCCAGTTTCCTATTGGAATGCGTGTTCTTGCTGTTGATGATGATAGAACTTGTCTCAAGGTTTTGGAGAGACTTCTCCAAAGGTGTCAATACCATGTAACCACTGCTCAAAGTGCACGAACGGCATTGAACTTGTTGAGAGAAAACAAAAACAATTTTGACCTAGTAATCAGTAATGTTCATATGCCAGACATGGATGGATTTAAGCTTCTTGAGCTTGTTGGACTTGAGATGGACCTACCTGTCATAATGTTTTCTGCAAATGATGATCCAGAGATGGTGATGAAAGGAATTGATCATGGTGCTTGTGATTATCTGCTGAAACCTGTTACATTTAAAGAGGTACAGATGATTTGGCAACATGTAATTAGGAAGAAGAAAACTAGCAAAAGAAGCAATCATGACGTGCCTAATTTTGATGGTGGAAATGGAATAGATTCAGCTGCGACAAGAAATTCTGATCAAAATGAAAAGCCAGCTAGAAAAAGGAAGGATAAGAATGATGATGTTGAGGAGGAGAATGAAGATGATCATGACAATGATGATCCAACAGCACAGAAGAAGCCTCGAGTTGTTTGGTCCAATGACTTACACCGCAAGTTTCTTGCTGTTGTTAATCAATTAGGCATTGAAAATGCTATACCAAAAAAGATTCTTGAATTGATGAATGTTGAAAATCTTACAAGGGATAATGTGGCCAGCCATCTCCAGAAATATAGACTCTATCTGAAAGGAATTAGTTCTGGGGAAAACCAACAAGCAAATACATCCCATTCAAAAATGAGTTCTCTCTCTAGAGTTGGAGGACATTTTCATACATTGAATGACTCTAGACAGTTTCATAATCATAACAGTGCTTTCAGACCCTTTCCATCTCGTGGTGGTATGAGTAGCAGATTGAACACTCCCGATAGTGTCAATATGCATGGATTTCCTACTCACTCCACAAATGATCACCTTAACTTTCAATCGGTCAAAGCTCACGCCAATCTGAACCATGTTCAAAGAATGCCAATTTCTTCTGCAGCCTCTCAGCATCCACTGTTTTCTTGCTCTTTACATGGAAAAAGGTTCAATGGCATTTGGTCAAGCACTATGCAATTACCTGAAACAAATTCTTACCTTCCACAAGGTGTTACTTTTAACAGCACTAGCAATGTGCCATTTCAAGGTTGGAATAAAAACCATAATAATCATGTGATTGGTAATTCAATAGGCTCCTCTACGACTCCTGTTGTGAATGTTGTCGAACGAGAAGGACCGTCAAAGAAACCACATGAGGCATATACGATGAGCAACAAGATGGAGTCTAAAAGTAGCTGTACCTCTAATGATATTTGTTCACTCGAAGACGTCATCAAAGTCATGACCAAACAGAAACAATTATATGCTAATTACTCTGGTGGGAAATCAAAGTGA 1425 0.3874 MNAQFPIGMRVLAVDDDRTCLKVLERLLQRCQYHVTTAQSARTALNLLRENKNNFDLVISNVHMPDMDGFKLLELVGLEMDLPVIMFSANDDPEMVMKGIDHGACDYLLKPVTFKEVQMIWQHVIRKKKTSKRSNHDVPNFDGGNGIDSAATRNSDQNEKPARKRKDKNDDVEEENEDDHDNDDPTAQKKPRVVWSNDLHRKFLAVVNQLGIENAIPKKILELMNVENLTRDNVASHLQKYRLYLKGISSGENQQANTSHSKMSSLSRVGGHFHTLNDSRQFHNHNSAFRPFPSRGGMSSRLNTPDSVNMHGFPTHSTNDHLNFQSVKAHANLNHVQRMPISSAASQHPLFSCSLHGKRFNGIWSSTMQLPETNSYLPQGVTFNSTSNVPFQGWNKNHNNHVIGNSIGSSTTPVVNVVEREGPSKKPHEAYTMSNKMESKSSCTSNDICSLEDVIKVMTKQKQLYANYSGGKSK 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04230 474 FunFam Two-component response regulator 186 249 - -
Mepo3g04230 474 PIRSF RR_ARR_type-B 1 470 IPR017053 GO:0003677|GO:0003700|GO:0009736
Mepo3g04230 474 Pfam Myb-like DNA-binding domain 192 242 IPR001005 -
Mepo3g04230 474 MobiDBLite consensus disorder prediction 157 171 - -
Mepo3g04230 474 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 187 246 IPR017930 -
Mepo3g04230 474 MobiDBLite consensus disorder prediction 128 193 - -
Mepo3g04230 474 CDD REC_typeB_ARR-like 11 125 - -
Mepo3g04230 474 Gene3D - 186 248 - -
Mepo3g04230 474 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 292 IPR045279 GO:0009736
Mepo3g04230 474 SUPERFAMILY Homeodomain-like 188 247 IPR009057 -
Mepo3g04230 474 NCBIfam myb-like DNA-binding domain, SHAQKYF class 190 243 IPR006447 GO:0003677
Mepo3g04230 474 Pfam Response regulator receiver domain 11 117 IPR001789 GO:0000160
Mepo3g04230 474 Gene3D - 8 139 - -
Mepo3g04230 474 SUPERFAMILY CheY-like 8 132 IPR011006 -
Mepo3g04230 474 ProSiteProfiles Response regulatory domain profile. 10 125 IPR001789 GO:0000160
Mepo3g04230 474 SMART REC_2 9 121 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04230 Mepo-Chr3 51301436 51305144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04230 4 341 Response Regulator Gene Family AT2G25180 54.810 3.47e-108 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Mepo3g04230 Response_reg 3.4e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04230 - K14491 mtr:25481958 634.795