Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04227 ATGGACAATCAACCAACACCATTCATTGAAGATGACAGTCGGAGAAGTGGAACGCGCCATCCTGTCTACCGCGGCGTCCGTAAACGACGGTGGGGAAAATGGGTATCAGAAATTCGTGAACCCAAGAAGAAATCTCGCATATGGCTAGGATCATTCCCGGTGCCGGAGATGGCTGCGAAAGCCTATGATGTTGCAGTGTATTGCCTGAAAGGCCAAAAAGCGCAACTCAACTTTCCCGATGAGGTGGAGAATCTACCACTTCCGGCCACATGTACGGCCAGAGACATTCAAGCAGCGGCGGCCAAGGCGGCGAGTATGATGAAGGCTTCGTTGGATGAGAAGGGTTGCATTGTTTCTGATGGAGATGATTTTTGGGGTGACATTGAGTTGCCGGAGCTGATGGATAGCGAGTCGTCGTGGAGTTGCTCCGGTGATATCATGGCGTGGTCAGAAGTTGAGCTTTTGGCGCAGCAACATTTCATGTCGTCGTGTCTATAA 498 0.51 MDNQPTPFIEDDSRRSGTRHPVYRGVRKRRWGKWVSEIREPKKKSRIWLGSFPVPEMAAKAYDVAVYCLKGQKAQLNFPDEVENLPLPATCTARDIQAAAAKAASMMKASLDEKGCIVSDGDDFWGDIELPELMDSESSWSCSGDIMAWSEVELLAQQHFMSSCL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04227 165 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Mepo3g04227 165 PRINTS Ethylene responsive element binding protein signature 61 81 IPR001471 GO:0003700|GO:0006355
Mepo3g04227 165 Pfam AP2 domain 21 71 IPR001471 GO:0003700|GO:0006355
Mepo3g04227 165 MobiDBLite consensus disorder prediction 1 20 - -
Mepo3g04227 165 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Mepo3g04227 165 CDD AP2 23 80 IPR001471 GO:0003700|GO:0006355
Mepo3g04227 165 Gene3D AP2/ERF domain 22 80 IPR036955 GO:0003700|GO:0006355
Mepo3g04227 165 FunFam Ethylene-responsive transcription factor 2 21 80 - -
Mepo3g04227 165 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Mepo3g04227 165 SUPERFAMILY DNA-binding domain 22 81 IPR016177 GO:0003677
Mepo3g04227 165 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04227 Mepo-Chr3 51286709 51287485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04227 12 165 AP2-EREBP Transcription Factor Family AT1G01250 63.354 2.00e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mepo3g04227 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04227 K09286 - gmx:100802036 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g04227 3 51286709 51287485 Mepo1g03927 1 45597637 45598407 PCT