Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04226 ATGGGATCAATAAAGCGCATGATATGGAATGAAGAAGAGAAAACAATGGTTGGAGCTGTTCTTGGTGCTAGAGCTTTGGATTTTTTGATAAATAACTGTTTATCAAATGAGAGTGGATTGATTGCTGTTGGTGAAAGTGTTGATTCTCTTCAAAACAAACTCTCTGATCTTGTTGAAAATTCTTCATCCAGTTTCAATTGGAACTACGCGATTTATTGGCGACTTTCTAAGTCAAAATCTGGTGATTACGTTCTTTGTTGGGCAGATGGGTGTTGTAGAGAACCAAACGAAGAAGAAAGTGGTGGTGGAGTTAGAGAAACTCTGAGTCTTGGCATAGAGGATGAAAAAGAAAAAGATGAAGAAGGAATGAAACAAAGTATGAAGAAGTGGGTTTTGCAGAAGTTGCATAAAGCTTTTGGTGGTTCAGATGAAGACAATTACGCTTTTGGCCTTGACCGTGTAACCGACACAGAGATGTTCTTTTTAGCTTCTATGTACTTCTTTTTCCCAAAAGGGTATGGTGGACCCGGTAAGTGTTTTGCTTCTGGTAAACATTTGTGGCTCAAATCTGTTTCTGATTACTGCTTTCGTTCTTTCTTGGCTAAATCTGCCGGTATTCAAACTGTTGTTTTAGTACCTACTGATTTCGGTGTTGTTGAGTTGGGTTCTGTTAGATTGTTACCTGAAATCTTTGAATTGTTAAACAAAATCAAATCATTGTTTTCAATTTCCAAACCTGCCACACAATCATTATCATTGTATCCTACGGTGGTCAATGAAGAAAGTGCAGTTTCAAATGGTGTTCAAGTTCCAAAAGTTGTGTTGAATTTGAACAATGGTCGTACACATTTTAGGGAGAAACTTGCTATTAGGAAAATGGATAGTAATAATGTTAATAATAGCACTAACTTTCCCAGTGCTAGAAATGGTATTTGTGGTTCTAGTTGGGGAGTGAATCAAGGTCAAGGTGAAATTTTTGCTTCTAATGGTGTGAGAAAGGATTTTAGGCTCAACAACAATAATAGCAACTACCAACCACAAAGGCAGATGCCAATGCAAATTGACTTTTCAGGAGCGAATTCGAGGGCTAATTCTGTGAGACCGGTTATTGCTGAATCGGAACTTGTTGCTGATGTTGAGGCTGATCAACCTAGTGATGAAAGGAGACCTAGGAAGCGCGGAAGGAAGCCTGCTAATGGAAGGGACGAACCTCTAAATCATGTGGAGGCAGAGAGGCAAAGGCGCGAGAAGCTTAATCAGCGTTTTTACGCCTTAAGAGCTGTTGTACCGAATATTTCCAAGATGGACAAGGCATCTTTACTTGGTGATGCTATTGCTTACATCAACGAGCTTCAAGCGAAACTCAAGATCATGGAGTCAGAGAGAGAATCATTTGGAAGCAGTACTTCCAGGGATGCATCGGGCAACTCGAGATCAGAAAATCGTCATCAGAATACTAGAGTTCATCTTCCGGATGTGGATATTCAAGCTGCTCAAGATGAGGTAATCGTGAAGGTGAGCTGTTCTCTTGATACTCATCCTGTTTCGAAAGTAATCGAAACATTCAAAGAGGCACAAATCAGTGTTGTAGAGTCGAAACTTGCTGCTGCAAATGATACTGTCTACCATAATTTTGTAATTAAGTCAGAAGGATCTGAACAGCTTACCAAGGACAAGTTGATTGCAGCATTTGCCCGAGAATCCAACTCCTTACAAACCCAAACTTTGTCCATATAG 1737 0.3984 MGSIKRMIWNEEEKTMVGAVLGARALDFLINNCLSNESGLIAVGESVDSLQNKLSDLVENSSSSFNWNYAIYWRLSKSKSGDYVLCWADGCCREPNEEESGGGVRETLSLGIEDEKEKDEEGMKQSMKKWVLQKLHKAFGGSDEDNYAFGLDRVTDTEMFFLASMYFFFPKGYGGPGKCFASGKHLWLKSVSDYCFRSFLAKSAGIQTVVLVPTDFGVVELGSVRLLPEIFELLNKIKSLFSISKPATQSLSLYPTVVNEESAVSNGVQVPKVVLNLNNGRTHFREKLAIRKMDSNNVNNSTNFPSARNGICGSSWGVNQGQGEIFASNGVRKDFRLNNNNSNYQPQRQMPMQIDFSGANSRANSVRPVIAESELVADVEADQPSDERRPRKRGRKPANGRDEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKIMESERESFGSSTSRDASGNSRSENRHQNTRVHLPDVDIQAAQDEVIVKVSCSLDTHPVSKVIETFKEAQISVVESKLAAANDTVYHNFVIKSEGSEQLTKDKLIAAFARESNSLQTQTLSI 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04226 578 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 402 451 IPR011598 GO:0046983
Mepo3g04226 578 SMART finulus 408 457 IPR011598 GO:0046983
Mepo3g04226 578 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 50 241 IPR025610 -
Mepo3g04226 578 MobiDBLite consensus disorder prediction 381 413 - -
Mepo3g04226 578 FunFam Transcription factor bHLH13 395 469 - -
Mepo3g04226 578 CDD bHLH_AtAIB_like 399 463 - -
Mepo3g04226 578 PANTHER MYC 38 563 IPR045084 GO:0003700|GO:0006355
Mepo3g04226 578 Gene3D - 396 466 IPR036638 GO:0046983
Mepo3g04226 578 MobiDBLite consensus disorder prediction 460 487 - -
Mepo3g04226 578 Pfam Helix-loop-helix DNA-binding domain 406 452 IPR011598 GO:0046983
Mepo3g04226 578 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 405 465 IPR036638 GO:0046983
Mepo3g04226 578 MobiDBLite consensus disorder prediction 378 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04226 Mepo-Chr3 51267113 51269590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04226 4 577 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 48.136 1.12e-177 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo3g04226 bHLH-MYC_N 1.8e-49 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04226 - - tpra:123889557 907.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g04226 3 51267113 51269590 Mepo1g03925 1 45559103 45561939 PCT