Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04224 ATGGAAGCCGAAACACGAAGAAAAGTTGAAGAAATGGTGTTAGATATACTCAAAAAATCCAACATTGATGAAACCACCGAGTTCACCATTCGTGTTGCCGCCTCTGAACGACTCGGTATCGACCTTTCCGGCCCAGAGACCAAGCAGTTCGTCAGAACCATCATCGAGTCTTATCTTCTCTCTATCGCCACCGACGCCGACAAACCTCCTCAAGTACCACCGCATGAGACACCCAAGGAAGTTGAACCACCACAACCACAAGACTTCAATAAGGTGGTGGGTATCAAACGCAAAAACGACGATTCAGAGGACGTTATTTGCCAGCTATCAGCCAGGAGGAATGTGGCGGTCCGAGATTTCAAAGGGATGACATTGGTTTCAATTAGGGAGTTCTACACTAAAGATGGAAAACAGCTTCCCACTGCTAAAGGGATAAGTTTATCTGCTGAACAATGGTCAACTTTCAAGAATTGTGTTCCCGCTATAGAGGAAGCTATCACTAAGTTGGAAGGAAGGATAAGATCAGAGCATAATGGCAGGAAAATTGGAGAAGCTTCAAGTTCAGTTGTTGATGTTCCCGTTGAGCCTGTCCCTGTTCAGTCTGTCCGTGTTGAGCCTGTCCCTGTTCAGTCTGTCCGTGTTGAGCTTGTCCCTGTTCAGTCTGTCCATGTTGAACCTGTCCCTATTGAGATCATCCGTTTTGATGGGAAGAATTACCAAGTTTGGGCTGAACAGATGGAGTTACTCTTGAAACAGTTAAAGATCAATTATGTGCTCACTGAACCATGTCCAAATGCTACATTAGGGGAAAAAGATGCAAGTGCTGGAAAGATTGCTGAAACAAAAGCTGCTGAAAAGACATGGGTAAATGATGATTCATTATGTCGGCGGAACATCTTGAACCATTTATCTGATAGTCTGTTCAACAAATATGCAAATAGAAAAATGAGTGCTAATGAGTTATGGGAAGAGTTAAAATCTGTTTATCTGTATGAGGAATACGGAACAAAGAGATCTCAGGTGAAAAAGTATATTGAATTTCAAATAGTTGATGAAAAATCAGTTGTTCACCAAATTCAAGAACTTAATAGCATTGCAGACTCTGTTGCTGCTGTTGGAATGCCTATTGAAGAGAACTTTCACGTTAGTGTCATCATTTCAAAGCTTCCGCTATCCTGGAAAGACTTTTGCATTAAGTTAATGTGCGAAGAGCATCTACCTTTCTGTAAGTTAATGGAATGCGTAACAAAAGAGGAAGAATCTCGCAGTGGAGTCAAACAAATGGGTGAACCTCCTGATAATGTAAGATTTCACCATGCTAATAAAGGGGGACTCAGAGAGGCTGACATTAAGCCACCACCAGGTTTTCAAAGGAAATTTGAATCTAATGGCAAGAACATTGCCTGTTATATTTGTGGGCAGAAGGGGCATATTTCTAAAAACTGTTGGAGATGGATGTAA 1461 0.4182 MEAETRRKVEEMVLDILKKSNIDETTEFTIRVAASERLGIDLSGPETKQFVRTIIESYLLSIATDADKPPQVPPHETPKEVEPPQPQDFNKVVGIKRKNDDSEDVICQLSARRNVAVRDFKGMTLVSIREFYTKDGKQLPTAKGISLSAEQWSTFKNCVPAIEEAITKLEGRIRSEHNGRKIGEASSSVVDVPVEPVPVQSVRVEPVPVQSVRVELVPVQSVHVEPVPIEIIRFDGKNYQVWAEQMELLLKQLKINYVLTEPCPNATLGEKDASAGKIAETKAAEKTWVNDDSLCRRNILNHLSDSLFNKYANRKMSANELWEELKSVYLYEEYGTKRSQVKKYIEFQIVDEKSVVHQIQELNSIADSVAAVGMPIEENFHVSVIISKLPLSWKDFCIKLMCEEHLPFCKLMECVTKEEESRSGVKQMGEPPDNVRFHHANKGGLREADIKPPPGFQRKFESNGKNIACYICGQKGHISKNCWRWM 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04224 486 ProSiteProfiles Zinc finger CCHC-type profile. 469 482 IPR001878 GO:0003676|GO:0008270
Mepo3g04224 486 FunFam RNA polymerase II transcriptional coactivator KELP 97 170 - -
Mepo3g04224 486 SUPERFAMILY ssDNA-binding transcriptional regulator domain 106 168 IPR009044 GO:0003677|GO:0006355
Mepo3g04224 486 MobiDBLite consensus disorder prediction 424 453 - -
Mepo3g04224 486 MobiDBLite consensus disorder prediction 424 446 - -
Mepo3g04224 486 SMART c2hcfinal6 468 484 IPR001878 GO:0003676|GO:0008270
Mepo3g04224 486 MobiDBLite consensus disorder prediction 65 88 - -
Mepo3g04224 486 Pfam Transcriptional Coactivator p15 (PC4) 107 157 IPR003173 GO:0003677|GO:0006355
Mepo3g04224 486 Pfam DEK C terminal domain 5 59 IPR014876 -
Mepo3g04224 486 Pfam Zinc knuckle 468 482 IPR001878 GO:0003676|GO:0008270
Mepo3g04224 486 Gene3D Transcriptional Coactivator Pc4; Chain A 96 174 IPR009044 GO:0003677|GO:0006355
Mepo3g04224 486 Pfam gag-polypeptide of LTR copia-type 288 422 - -
Mepo3g04224 486 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 3 60 IPR014876 -
Mepo3g04224 486 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 3 172 IPR045125 GO:0003713|GO:0060261
Mepo3g04224 486 SUPERFAMILY Retrovirus zinc finger-like domains 457 482 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04224 Mepo-Chr3 51245287 51248625 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Mepo3g04224 Retrotran_gag_2 1.5e-16 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04224 - - psat:127128865 647.891