Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04220 ATGGAAACAGGTGGAGTTGATAGTAGTATATTGTCATTGACCATGATGGAAGAGGCTGAACATCATCATCATCATCAATTTTCTTCAATCTCAAAGCTGCATAACAATGCTCCCACCACTACCAGTGTCCATGATCTTCTTGAATGTCCGGTTTGCACCAATTCAATGTACCCTCCAATCCATCAGTGTCACAATGGACATACCCTTTGTTCAAATTGTAAGACAAGGGTACACAACAGATGTCCAACTTGCAGGCAAGAGCTAGGCGATATAAGGTGTTTAGCATTGGAGAAGATAGCAGAATCACTTGAGTTTCCTTGTAGATACATATCTCTTGGTTGCTCAGAGATATTTCCATATTTTAGCAAACTCAAACATGAGTCTATCTGTACCTTTAGACCATACAATTGCCCTTATGCTGGATCAGACTGTTCTGTTGTTGGAAATATTCCATACCTTGTTGCCCATTTAAGGGATGACCATGGGGTTGATATGCATTCTGGATGCACTTTTAACCATCGTTATGTCAAATCAAATCCTACGGAAGTAGAAAATGCTACTTGGATGCTAACGGTTTTTCATTGTTTTGGTCAGTATTTTTGTCTTCATTTTGAAGCATTCCAGCTTGAAACGTCACCTGTTTACATGGCGTTTCTTCGATTCATGGGTGATGATAGAGACGCCAAGAACTACAGCTACAGCTTAGAAGTGGGAGGAAATGGACGTAAACTAACATTTGAAGGGAGTCCAAGAAGCATTAGAGATAGTCACAAGAAAGTGAAGGATAGTCATGATGGCCTAATCATATACCGTAACATGGCACTTTTCTTCTCAGGTGGGGATAGAAAAGAGTTGAAACTAAGAGTAACAGGAAGGATATGGAAAGAGCAGCAAAACTCTGAATGCACACCCAACATGTGTAGTTAG 927 0.4024 METGGVDSSILSLTMMEEAEHHHHHQFSSISKLHNNAPTTTSVHDLLECPVCTNSMYPPIHQCHNGHTLCSNCKTRVHNRCPTCRQELGDIRCLALEKIAESLEFPCRYISLGCSEIFPYFSKLKHESICTFRPYNCPYAGSDCSVVGNIPYLVAHLRDDHGVDMHSGCTFNHRYVKSNPTEVENATWMLTVFHCFGQYFCLHFEAFQLETSPVYMAFLRFMGDDRDAKNYSYSLEVGGNGRKLTFEGSPRSIRDSHKKVKDSHDGLIIYRNMALFFSGGDRKELKLRVTGRIWKEQQNSECTPNMCS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04220 308 FunFam E3 ubiquitin-protein ligase SINAT5-like 158 290 - -
Mepo3g04220 308 SUPERFAMILY RING/U-box 43 89 - -
Mepo3g04220 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 157 IPR013083 -
Mepo3g04220 308 ProSiteProfiles Zinc finger SIAH-type profile. 102 162 IPR013010 GO:0008270
Mepo3g04220 308 ProSiteProfiles Zinc finger RING-type profile. 49 85 IPR001841 -
Mepo3g04220 308 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 30 296 - -
Mepo3g04220 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 101 IPR013083 -
Mepo3g04220 308 CDD Sina 163 291 - -
Mepo3g04220 308 Pfam Seven in absentia protein family 91 290 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mepo3g04220 308 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 169 290 IPR008974 GO:0005515
Mepo3g04220 308 FunFam E3 ubiquitin-protein ligase SINAT3 99 157 - -
Mepo3g04220 308 CDD RING-HC_SIAHs 47 85 - -
Mepo3g04220 308 SUPERFAMILY TRAF domain-like 102 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04220 Mepo-Chr3 51192822 51195632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04220 29 297 C3H Transcription Factor Family AT2G41980 74.721 1.49e-154 432