Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04210 ATGAAATCTGGAATTCAGAACCTGAAGCGATGTAGTAAGCTAGAAGAAGAATCTCCACCACAGATTCAGAAGAAGAAGACCAAACTCAATGGCGAGATCCACTCCAATTCAGCTTCCACCGATTTGAATATTGTAGCTGAAAATGCACCTTTGTTGTCGCGATCATCCAGAGGCCGCGTTAAAATGCTTCCATCCAAGTTCAAGGACTCTGTACTTCTCGGCACTCAGAAGAAGAAGAATAGTGACATTGGAATTAGATTTGTAAATAAGGGAAAGGAAAACAAACGCGATTCGAAAAATGAGAATGATAATGGTTTTGATGAATTTGATTATGAGAAGCATGCTAAGTCGTTTAAGAGCATTAAAAAGACGGTTAAAGGGAGTCGTGTGTTATTGGTTAAAGCGGAGAGTGAAAATGGTTTTGATGAAAAGGGTAAAAAGGGGAAAGAGATTTTCAAACTTGTGGATTTTCATTTGGGTGATATAGTTTGGGCAAAATGTGGCAAGACTTTTCCGGCATGGCCTGCTGTGGTCATTGATCCAATCTTGCAAGCTCCTGAGTCTGTTCTTAGACGTTGTGTTCCCGATGCAATTTGTGTTATGTTTTTCGGTTATTCGAAAAATGGAAAGCAAAGGGACTATGCGTGGGCGAAGCAGGGGATGGTGTTCCCCTTCTTGGAATTCATGGATAGATTCCAGGGGCAGACCCGATTGTACAAGACCAAAGGAAGTGACTTTCACAAGGCAATGGAGGAGGCAATGTTGGCAGATAATGGCATTCTGGATCCACATTATAGAGCTGAGCAAATTGTGGAGGGTGCGACTTCCTGTGCTGAACAGGAATATCACTGCCAAGGCCAGGATACAATATCTTGTTATGGCTGCGGTTTGACGTTGCCATGCAAAACCATGAAGAAGATTAAGGATTCGAGCTGTGCACCTCAGCATTATTGTAAATCTTGTGCAAAGTTACTTAAATCGAAACAATACTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGCTGGTGATTGGGTATGCTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGACAAAATTTCCAGCAAACGTTTCAAGGATCTGGAAAATATAGATTACTATTGCCCAGATTGCAATGGAAAGTCGGATTGTAAGTTATCCACATCACAAACATACAAATCAAAAATCAAATCAGTAGAAAACGACCAAAAACCTGTGTTACCTGAAAATCTAGCGGTGGTGTGCAATGACTTGAAAGGAATATACTTTCCAAAGCTTCATTTAGTTTTGTGCAAGTGTAGCACGTGTGGGTCAAAAAAGCAGGCATTGGCTGAATGGGAACGACATACAGATCACGGAACACAATCCCCAAGCTGGAATTTCCATGAAGTTAAGTCAGAAACAGGTGTTTTCCTTTTTGCAAGATGCCAAGTTGCTGTTCACCAAGAGTGCTATGGTGCAAAGAATGTTCAAGATTTTACTTCCTGGGTTTGCAGAGTGTGTGAAACTCCTGATGTAGAAAGAGAATGTTGCCTGTGTCCAGTAAAAGGCATGTCATCTACATTTAATACTTTCTTTGGTGGTGCACTGAAGCCAACTGATGTTGAGTTGCTGTGGGTTCATGTAACATGTGCTTGGTTCCGGCCTGAAGTTGTTTTCCGAAACCATGAGGCAATGGAACCTGCCTCTGGAATCCTTAAGATTCCTCCTAGTTCCTTTTTGAAGACTTGTGTGATCTGTAAACAAAGCCATGGTTCCTGTACAAGTTGTTGCAAGTGTGCTACATATTTTCATGTGATGTGTGCATCAAGGATGGGATATAGCATGGCATTGCGTTCTACAGTGAAGAAGGGAACTCAAATAACACAGACGCTAATATATTGTGCAGTTCACAGGGTCCCAAATCCAGATTCAGTAGTGGTTGTACATACCTCTCTAGGGGTATTCTCTCCAAGAACTTCACTTCAAAACCACAAGGGACGCTTTAGAGGATCAAAGCTTATTTCATCAAATAACTTAGAACTCCTTGAACCTTCAACCTCTGAACATTATGAGGTTGAGCCACTATCTGCCGCCAAGTGTCGCGTTTACAAAAGGCCTCCCAATAAGAAGGATGGTGCACCAATAATTCACTTGCTTGGGGGACCAAACCTTCATTCTTTAAGTGCAATAACTCAATTGAACAACAATACGGATGCTGGGGTGTTTTCTTCATTTAAGGAACGTCTTCACCATTTACAGAAAACGGAAAATTGTAGAGTCTGCCTTGGAAAATCAGCTATTCAAGGGTGGGGTCTCTTTGCTCGTAGAGATTTGCAAGAAGGGGACATGGTTGTTGAGTATCGTGGTGAACAGTTAAGGCGTAGTGTTGCTGATCTGAGGGAAGCAAAGTACCGGTTAGAAGGCAAAGATTGTTATCTGTTCAAGATTAGTGAGGAAGTGGTAATTGATGCAACTGATAAGGGCAACATTGCACGGCTAATAAACCATTCTTGCATGCCAAACTGCTTTGCAAGGATTATGTGCTTGGGAGATCAGGAGAGCAGGATTGTTCTTATTGCCAAGACCAATATTTCTGCTGGTGAAGAACTAACGTATGATTACTTGTTCGATACAGATGAGCAAGATGAACTCAAGGTTCCCTGCCACTGCAAAGCCCCCAATTGTAGAAAATTTATGAACTAG 2694 0.4183 MKSGIQNLKRCSKLEEESPPQIQKKKTKLNGEIHSNSASTDLNIVAENAPLLSRSSRGRVKMLPSKFKDSVLLGTQKKKNSDIGIRFVNKGKENKRDSKNENDNGFDEFDYEKHAKSFKSIKKTVKGSRVLLVKAESENGFDEKGKKGKEIFKLVDFHLGDIVWAKCGKTFPAWPAVVIDPILQAPESVLRRCVPDAICVMFFGYSKNGKQRDYAWAKQGMVFPFLEFMDRFQGQTRLYKTKGSDFHKAMEEAMLADNGILDPHYRAEQIVEGATSCAEQEYHCQGQDTISCYGCGLTLPCKTMKKIKDSSCAPQHYCKSCAKLLKSKQYCGICKKIWHHSDAGDWVCCDGCNVWVHAECDKISSKRFKDLENIDYYCPDCNGKSDCKLSTSQTYKSKIKSVENDQKPVLPENLAVVCNDLKGIYFPKLHLVLCKCSTCGSKKQALAEWERHTDHGTQSPSWNFHEVKSETGVFLFARCQVAVHQECYGAKNVQDFTSWVCRVCETPDVERECCLCPVKGMSSTFNTFFGGALKPTDVELLWVHVTCAWFRPEVVFRNHEAMEPASGILKIPPSSFLKTCVICKQSHGSCTSCCKCATYFHVMCASRMGYSMALRSTVKKGTQITQTLIYCAVHRVPNPDSVVVVHTSLGVFSPRTSLQNHKGRFRGSKLISSNNLELLEPSTSEHYEVEPLSAAKCRVYKRPPNKKDGAPIIHLLGGPNLHSLSAITQLNNNTDAGVFSSFKERLHHLQKTENCRVCLGKSAIQGWGLFARRDLQEGDMVVEYRGEQLRRSVADLREAKYRLEGKDCYLFKISEEVVIDATDKGNIARLINHSCMPNCFARIMCLGDQESRIVLIAKTNISAGEELTYDYLFDTDEQDELKVPCHCKAPNCRKFMN 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04210 897 CDD PHD_TCF19_like 331 381 - -
Mepo3g04210 897 SMART PHD_3 330 382 IPR001965 -
Mepo3g04210 897 SMART PHD_3 579 635 IPR001965 -
Mepo3g04210 897 SMART PHD_3 435 505 IPR001965 -
Mepo3g04210 897 Pfam SET domain 766 871 IPR001214 GO:0005515
Mepo3g04210 897 SMART PostSET_3 881 897 IPR003616 -
Mepo3g04210 897 SMART PWWP_4 157 226 IPR000313 -
Mepo3g04210 897 ProSiteProfiles PWWP domain profile. 159 228 IPR000313 -
Mepo3g04210 897 SUPERFAMILY SET domain 749 894 IPR046341 -
Mepo3g04210 897 ProSiteProfiles SET domain profile. 755 872 IPR001214 GO:0005515
Mepo3g04210 897 Gene3D - 154 258 - -
Mepo3g04210 897 ProSiteProfiles Post-SET domain profile. 881 897 IPR003616 -
Mepo3g04210 897 CDD SET_SETD1-like 744 893 - -
Mepo3g04210 897 FunFam Histone-lysine N-methyltransferase 729 897 - -
Mepo3g04210 897 MobiDBLite consensus disorder prediction 9 31 - -
Mepo3g04210 897 Gene3D SET domain 725 897 IPR046341 -
Mepo3g04210 897 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 897 IPR025780 -
Mepo3g04210 897 ProSiteProfiles Zinc finger PHD-type profile. 328 384 IPR019787 -
Mepo3g04210 897 SUPERFAMILY Tudor/PWWP/MBT 154 256 - -
Mepo3g04210 897 Pfam PHD-finger 478 505 - -
Mepo3g04210 897 PANTHER PHD FINGER PROTEINS 47 360 - -
Mepo3g04210 897 ProSiteProfiles Extended PHD (ePHD) domain profile. 510 635 IPR034732 -
Mepo3g04210 897 Pfam PHD-finger 330 382 IPR019787 -
Mepo3g04210 897 Pfam PHD-zinc-finger like domain 512 634 - -
Mepo3g04210 897 CDD PWWP_AtATX3-like 160 259 - -
Mepo3g04210 897 SMART set_7 755 878 IPR001214 GO:0005515
Mepo3g04210 897 Pfam PWWP domain 160 254 IPR000313 -
Mepo3g04210 897 SUPERFAMILY FYVE/PHD zinc finger 328 388 IPR011011 -
Mepo3g04210 897 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 324 384 IPR013083 -
Mepo3g04210 897 FunFam Histone-lysine N-methyltransferase 508 637 - -
Mepo3g04210 897 MobiDBLite consensus disorder prediction 1 35 - -
Mepo3g04210 897 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 506 636 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04210 Mepo-Chr3 51133223 51141835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04210 294 355 EF-hand Containing Proteins AT5G28340 59.677 4.91e-18 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mepo3g04210 zf-HC5HC2H_2 1.7e-22 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04210 - - lja:Lj1g3v5034780.1 1238.79