Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04209 ATGACGTGTGCAATTGGGATAGGATGCGTATCATGGTTCAAGCGTAGAAGAAGGACAATATCAGCCGAACCTTCCATTGACATTACCATTACAAGGATGAGGATGGGTCTGGACGAGTCAACAATTGAGTCTTTTGGGAAGGTTGTGTTAGGAGAGAGCCGAAGGCTGCCGGGAGTGGGACACAATGATGGAACCGGATGTTGCTCAATATGCCTCTCAGAGTACAACGTTAAGGACATAATTAGATGCATTCCTGAATGCAAACACTGTTTCCATGCTCACTGCATTGATGAATGGCTTCGCATGAACGCTACATGCCCAGTTTGCCGCAACTCTCCCTCCCCTTCTCATTATCTTCTTCATATATCATCATGA 375 0.4587 MTCAIGIGCVSWFKRRRRTISAEPSIDITITRMRMGLDESTIESFGKVVLGESRRLPGVGHNDGTGCCSICLSEYNVKDIIRCIPECKHCFHAHCIDEWLRMNATCPVCRNSPSPSHYLLHISS 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04209 124 SMART ring_2 68 109 IPR001841 -
Mepo3g04209 124 Pfam Ring finger domain 68 110 IPR001841 -
Mepo3g04209 124 ProSiteProfiles Zinc finger RING-type profile. 68 110 IPR001841 -
Mepo3g04209 124 SUPERFAMILY RING/U-box 67 114 - -
Mepo3g04209 124 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 114 IPR046948 -
Mepo3g04209 124 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 115 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04209 Mepo-Chr3 51130408 51130782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04209 15 115 C3H Transcription Factor Family AT2G25410 55.446 3.30e-33 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04209 - - tpra:123889576 232.646
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g04209 3 51130408 51130782 Mepo1g03904 1 45365078 45367584 PCT