Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04186 ATGAATGATGAGTTTCGAATTGGAATGCATATTCTTGCTGTTGATGATGACAGAACTTGTCTCAAGATTTTGGAGAGACTTCTCGATAGGTGTCAATACCATGTAACCACTGCTCCAAGTGCACGAATGGCACTGAATTTGTTAAGAGAAAACAAAAACAAATATGAGCTAGTAATGAGTAATGTTCATATGCCAGACATGGATGGATTTAAGCTTCTTGAGCATGTTGGACTTGAGATGGACCTACCTGTCATAATGTTTTCTGAAAATGATGATCCTAAGATGGTGATGAAAGCAATTGATCTTGGTGCTTGTGATTATCTGCTGAAACCTATTCAACTGAAAGAGGTGAAGATGATTTGGCAACATGTAATCAGAAAGAAGAAAACTAGCAAAAGAAGCAATGACGATGTGCCTAATTCTGATTGTGGAAATGGAATAGATTCAGCTGTGACAAAAAATTCTGATAAAATTGAAAAGGCATCAAGAAAAAGGAAGGATAAGAATGAAAATGAAGTTGAGGAAGAGAATGAGTATGATCATGAAAATGATGGTCCAACAGCGCCGAAGAAGCCTCGATTTCGTTGGTCCAATGACTTACACCACAAGTTTGTTGTCGCGGTTAATCGATTTGGCGTTGAAAAAGCTAGGCCACAAAAGATTCTTAACTTGATGAATGTTGAAAATCTTACAAAGGAACATGTGGGCAGCCATCTCCAGAAATATAGACAAAAGCTGAAAAGTAATAGTTATGGGAAAAACCATCAAGCTAATATGGTGGCTAGTGGTTTTGATACATCTCACTCAAGAATTTACACTCCTCCTAGTGCCAATATACATGGGTTGGCTACTCTTAATTTAAACACCTCCTTGGTTGGAAATGAGATGAGTCAAACTTGTTTAGACACGACACGACTCGACTTGACTTGA 930 0.3785 MNDEFRIGMHILAVDDDRTCLKILERLLDRCQYHVTTAPSARMALNLLRENKNKYELVMSNVHMPDMDGFKLLEHVGLEMDLPVIMFSENDDPKMVMKAIDLGACDYLLKPIQLKEVKMIWQHVIRKKKTSKRSNDDVPNSDCGNGIDSAVTKNSDKIEKASRKRKDKNENEVEEENEYDHENDGPTAPKKPRFRWSNDLHHKFVVAVNRFGVEKARPQKILNLMNVENLTKEHVGSHLQKYRQKLKSNSYGKNHQANMVASGFDTSHSRIYTPPSANIHGLATLNLNTSLVGNEMSQTCLDTTRLDLT 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04186 309 PIRSF RR_ARR_type-B 1 302 IPR017053 GO:0003677|GO:0003700|GO:0009736
Mepo3g04186 309 Gene3D - 9 185 - -
Mepo3g04186 309 Coils Coil 158 178 - -
Mepo3g04186 309 ProSiteProfiles Response regulatory domain profile. 10 125 IPR001789 GO:0000160
Mepo3g04186 309 SUPERFAMILY CheY-like 8 132 IPR011006 -
Mepo3g04186 309 MobiDBLite consensus disorder prediction 153 172 - -
Mepo3g04186 309 CDD REC_typeB_ARR-like 11 125 - -
Mepo3g04186 309 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 252 IPR045279 GO:0009736
Mepo3g04186 309 Pfam Myb-like DNA-binding domain 195 243 IPR001005 -
Mepo3g04186 309 SUPERFAMILY Homeodomain-like 188 248 IPR009057 -
Mepo3g04186 309 Pfam Response regulator receiver domain 11 117 IPR001789 GO:0000160
Mepo3g04186 309 Gene3D - 187 248 - -
Mepo3g04186 309 NCBIfam myb-like DNA-binding domain, SHAQKYF class 191 245 IPR006447 GO:0003677
Mepo3g04186 309 SMART REC_2 9 121 IPR001789 GO:0000160
Mepo3g04186 309 FunFam Two-component response regulator 187 250 - -
Mepo3g04186 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 188 247 IPR017930 -
Mepo3g04186 309 MobiDBLite consensus disorder prediction 137 152 - -
Mepo3g04186 309 MobiDBLite consensus disorder prediction 128 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04186 Mepo-Chr3 50937457 50939506 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04186 3 261 Response Regulator Gene Family AT4G31920 57.529 6.02e-89 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Mepo3g04186 Response_reg 4.6e-22 CL0304