Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04162 ATGCAGCATTCAGTTATGGCGGATACGAAGGAATTGAAAGAACGGTTATTGAAACTTGTCAAAACTATCTTTGACTCTGATGATGACTATTCTCTTCAAAACGCCGACGATGCTATCGCAACTCTTTCTTCTCTCAAAGATTTGAAAATCAACTCTCGTAGTAAGAATGGAACAACAAAATCTTTCTCTGATAAATTGGACCATTTTACCCCTCCTTCTCATTTTCGTTGCCCTATTTCTTCTCAATTGATGATCGACCCTGTTATCTTGTCCACCGGACAGACTTATGATCGGCCATTCATCCAGAGGTGGTTGAATGAAGGCAAAAGAACATGTCCTCAAACCCAGCAAGTTCTTTCTCACACAATTCTTACTCCTAATTACTTGGTCCGAGACATGATTGTGCAGTGGTGTAAGGAGCGTGGACTTGAGCTACCACAGCCTTCTGCTCGGGACACAGATGAAGTGGTGACTAATGCAGACAGAGACCGTTTAAATGTATTGCTTCATAAGTTATCGTGTTCTGTTTCTGATCAGAAAGCGGCTGCGAAAGAGCTTCGGTTGTTAACAAAGCGGACACCTTCGTTTCGAACCCTTTTTAAGGAGTCTGGTGATGTGATCACACAGTTGCTTCATCCATTATCACCAGGCAGTGCTTGTCCTCACCCTGATCTTCAAGAGGATTTGATCACAACTATTCTGAATCTCTCAATTCTTGACGATAATAAGAAAGTGTTTGCAGAGGATCCAACACTCATTAACCTGTTGATTGATGCCATGAAATGGGGAACCATTCCAACAAAAAGCAATGCTGCAGCAGCTATTTTCACATTATCAGCAATCGATTCCAACAAACTCATCATTGGAAAATCTGGAGCTATAAAACATTTGGTTGGCCTTCTAGATGAGGGAGATACATTAGCCATGAAAGATGCTGCATCAGCCATATTTAACCTATGTCTTGTTCATGAGAATAAAGGGAGGACCGTGCGAGAAGGGGCAGTTAGGGTAATTTTGAATAAGATCATGAACAGCATTCTAGTTGATGAGCTGTTGGCTATACTAGCACTCCTCTCCAGTCATCCCACGGCTGTTGAAGAAATGCGCGATCGCGGCACAGTTCCTTTCTTACTGAAAATTATAAGGGAGAGCACATCAGAAAGATGCAAGGAAAATTGCATTGCAATCCTATATACAATCTGTTATAATGACAGAACAATGTGGAAGGAAATCAAAGAAGAAGAAAAGACCAATGGTACGTTATCTAAGCTCGCACAATGCGGAACTTCAAGGGCGAAAAGGAAGGCTAGCGGTATTCTAGAGAGGGTCAACAGATCTCCATCCTTAACTCACACTGCTTAG 1362 0.4192 MQHSVMADTKELKERLLKLVKTIFDSDDDYSLQNADDAIATLSSLKDLKINSRSKNGTTKSFSDKLDHFTPPSHFRCPISSQLMIDPVILSTGQTYDRPFIQRWLNEGKRTCPQTQQVLSHTILTPNYLVRDMIVQWCKERGLELPQPSARDTDEVVTNADRDRLNVLLHKLSCSVSDQKAAAKELRLLTKRTPSFRTLFKESGDVITQLLHPLSPGSACPHPDLQEDLITTILNLSILDDNKKVFAEDPTLINLLIDAMKWGTIPTKSNAAAAIFTLSAIDSNKLIIGKSGAIKHLVGLLDEGDTLAMKDAASAIFNLCLVHENKGRTVREGAVRVILNKIMNSILVDELLAILALLSSHPTAVEEMRDRGTVPFLLKIIRESTSERCKENCIAILYTICYNDRTMWKEIKEEEKTNGTLSKLAQCGTSRAKRKASGILERVNRSPSLTHTA 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04162 453 Pfam Armadillo/beta-catenin-like repeat 284 320 IPR000225 GO:0005515
Mepo3g04162 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 144 IPR013083 -
Mepo3g04162 453 Gene3D - 168 448 IPR011989 -
Mepo3g04162 453 ProSiteProfiles U-box domain profile. 70 144 IPR003613 GO:0004842|GO:0016567
Mepo3g04162 453 SMART arm_5 281 321 IPR000225 GO:0005515
Mepo3g04162 453 SMART arm_5 361 402 IPR000225 GO:0005515
Mepo3g04162 453 SMART Ubox_2 74 137 IPR003613 GO:0004842|GO:0016567
Mepo3g04162 453 CDD RING-Ubox_PUB 72 124 IPR045210 -
Mepo3g04162 453 SUPERFAMILY ARM repeat 173 443 IPR016024 -
Mepo3g04162 453 Pfam U-box domain 72 141 IPR003613 GO:0004842|GO:0016567
Mepo3g04162 453 SUPERFAMILY RING/U-box 66 146 - -
Mepo3g04162 453 FunFam RING-type E3 ubiquitin transferase 348 449 - -
Mepo3g04162 453 FunFam RING-type E3 ubiquitin transferase 70 144 - -
Mepo3g04162 453 PANTHER U BOX DOMAIN-CONTAINING 27 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04162 Mepo-Chr3 50751718 50754241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04162 133 453 U-box Gene Family AT3G07360 58.589 5.65e-124 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04162 - - gmx:100806619 615.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g04162 3 50751718 50754241 Mepo3g04162 3 50751718 50754241 ECH