Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04151 ATGTTGAAGTTCTCTCGCATGCTTCCTTCATCTTCCAGGAATCATCTATTGGAAGTTCTTTCCGCTAGGGATTTCTCTACTGCCACAAATAACAACTATTCTGCTAAAGGATATACTTCAGATCGTATATTTGCTCCTTATTCTGTTTACAAGGGCAAAGCTGCATTCTCACTCAGTCCTTGTCTTCCTACTTTTACTAAGTTGGATTCTGGGGCTCTTGTGGTTGATCGTCGCGGTTCCATAATGATGAGTTTCATGCCTGCTATTGGGGAGCGCAAATATGACTGGGAGAAGAGACAAAGATTTGCCCTATCAGCTACTGAAGTCGGTTCTTTGATAGCCATTGGTCCCCAAGATTCATGTGAATTCTTTCATGACCCCTCAATGAAATCAAGTAATGCTGGTCAAGTAAGGAAGAGTTTGTCAATTAAGCCTCATAGCAATGGCTACTTTTTCTCTCTGTCTGTTGTTAACTCCGTGTTAAATACCAAAGACAATTTTAGTGTTCCTGTTACAACTGCTGAGTTTGCTGTGATGAAGACAGCTTGCAGTTTTGCGTTGCCACACATTATGGGTTGGGATCGTCTAACTAATCAGCAGTCCAGTGGGACAGTCAGCTTTCAACCAAAGATGAACTCACAAATTTTAGACTTGGAGTGGGAAAAGTGA 669 0.417 MLKFSRMLPSSSRNHLLEVLSARDFSTATNNNYSAKGYTSDRIFAPYSVYKGKAAFSLSPCLPTFTKLDSGALVVDRRGSIMMSFMPAIGERKYDWEKRQRFALSATEVGSLIAIGPQDSCEFFHDPSMKSSNAGQVRKSLSIKPHSNGYFFSLSVVNSVLNTKDNFSVPVTTAEFAVMKTACSFALPHIMGWDRLTNQQSSGTVSFQPKMNSQILDLEWEK 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04151 222 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 24 222 IPR013742 GO:0003697|GO:0006355|GO:0006952
Mepo3g04151 222 Pfam Whirly transcription factor 49 181 IPR013742 GO:0003697|GO:0006355|GO:0006952
Mepo3g04151 222 SUPERFAMILY ssDNA-binding transcriptional regulator domain 40 203 IPR009044 GO:0003677|GO:0006355
Mepo3g04151 222 Gene3D Transcriptional Coactivator Pc4; Chain A 33 204 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04151 Mepo-Chr3 50598342 50601504 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04151 1 222 Whirly Transcription Factor Family AT1G71260 58.403 5.97e-92 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Mepo3g04151 Whirly 1.6e-55 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04151 K26561 - gmx:100817863 344.354