Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04143 ATGGATAATTTTATATTTAATATTCTGTTTGTCTTGTGTTCGCTTTTTGCAGCGTGTTGCACCTTTCTCCTTTACTACCGTATGTTCTTCCAGAAGTCATCCTCCGTGGAATCCCCTCAATACGATGTTGAGTCAACAGCGATGGAGGAGGAAGAGGAAGTTGCACAGGGATTAGACGAGTCTGTTATAAACGCTATTTCGTCTTTCATCTACACCACCACAAAGTCTGAACAACAAGAAGAATCTCGTGTTGAGTGTGCAGTTTGCTTGGAGGAATTCCAAGATAATAATCACATTCGTACCCTCCCTCTTTGCTCTCACACTTTCCATCTCAATTGCATTGATGTTTGGCTTCGTTCAAACCCTAGTTATCCTATATGTCACTCCTGTCTTGTTGAGGAGGACTATATGCCCAAACGCTCTAATGCATCTAGTTCCAAGCGGACCTTGTCATCAGAGAGAATAGTCGTCATCGACATCCCTACCACCACATCCCCATTGTAG 504 0.4306 MDNFIFNILFVLCSLFAACCTFLLYYRMFFQKSSSVESPQYDVESTAMEEEEEVAQGLDESVINAISSFIYTTTKSEQQEESRVECAVCLEEFQDNNHIRTLPLCSHTFHLNCIDVWLRSNPSYPICHSCLVEEDYMPKRSNASSSKRTLSSERIVVIDIPTTTSPL 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04143 167 PANTHER RING-H2 FINGER PROTEIN ATL16 8 160 IPR044600 GO:0016567|GO:0016740
Mepo3g04143 167 SUPERFAMILY RING/U-box 70 133 - -
Mepo3g04143 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 132 IPR013083 -
Mepo3g04143 167 SMART ring_2 86 130 IPR001841 -
Mepo3g04143 167 ProSiteProfiles Zinc finger RING-type profile. 86 130 IPR001841 -
Mepo3g04143 167 FunFam E3 ubiquitin-protein ligase ATL6 46 134 - -
Mepo3g04143 167 Pfam RING-like zinc finger 85 114 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04143 Mepo-Chr3 50545858 50546361 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04143 9 167 Rapid Response to Elicitors AT3G05200 30.061 2.22e-24 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04143 - K10664 mtr:11424482 207.223