Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04142 ATGGTTGAGAACTTAGAAACTCTGCTGTTTTTCAGCTCGTTGGTATTTGCGTCAACAACTTGTTCCCTCCTTATCGCTTGCTTCCTAGCCCGCACTTGCCGCCGGTTCCTCCCTAACATCTCCTCCTCCTCCTTGAGGGACGTGGAGATGGTGGAGGAGGAGGTTCCACAGGGCTTAGACGAGTTAGTTATAAATGCTATTCCGTCTTTCATCTACAATACTACTACTAAGTCTGAACAAGAAGATTGTTCAGTTTGCTTGGCTGAATTCAAGGATAATGATCATGTTCGTACCCTCCCTCTTTGCTCCCACATTTTTCATCTCGATTGCATTGATGTTTGGCTTCGTTCACACCCTAACTGTCCACTCTGTCGCTCCCCTATTTGCTGTCATCTCTGTTGTTTACTTGCATCGATCAACAACAACAACAACGGGACTAGTTTTAATGAACGGGTGGACTTTCCGTTCTTACCCCCTTATTCATTTGCTTCTGAGCAAAGCTTGTCGCCGGAGAGAGAAGTCGACAACATCCCTGCCACCACATCCACATCTTAG 555 0.4631 MVENLETLLFFSSLVFASTTCSLLIACFLARTCRRFLPNISSSSLRDVEMVEEEVPQGLDELVINAIPSFIYNTTTKSEQEDCSVCLAEFKDNDHVRTLPLCSHIFHLDCIDVWLRSHPNCPLCRSPICCHLCCLLASINNNNNGTSFNERVDFPFLPPYSFASEQSLSPEREVDNIPATTSTS 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04142 184 ProSiteProfiles Zinc finger RING-type profile. 83 125 IPR001841 -
Mepo3g04142 184 Pfam Ring finger domain 82 125 IPR001841 -
Mepo3g04142 184 SUPERFAMILY RING/U-box 63 130 - -
Mepo3g04142 184 SMART ring_2 83 124 IPR001841 -
Mepo3g04142 184 PANTHER RING-H2 FINGER PROTEIN ATL16 11 141 IPR044600 GO:0016567|GO:0016740
Mepo3g04142 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 132 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04142 Mepo-Chr3 50535205 50535759 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04142 56 135 C3H Transcription Factor Family AT3G18930 50.549 4.46e-25 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04142 - K19041 mtr:11424482 124.405