Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04141 ATGGATAATCAGATGTTTGGAACTATGTTTGTCTTGTGTTCGTTTCTCGTAGCGAGCTGCATGCTTGTCGTTTATCTAGTGGTACACACTTACCGCCGGTTCCTCCCGAAGTCCCCCTTAGTGGAATCCCCTCAACACAACGTTGAGTCAACAACGATGGAGGAGGAGGAGGAGGAGGAGGAGGTTGCACAGGGCTTAGACGAGTCTATTATAAACGCTATTCCGTCTTTCATCTACACCACCACAAAGTCTGAACAAGAACAAGAATCTCGTGCTGAGTGTGCAGTTTGCTTGGAGGAATTCCAAGATAATAATCACATCCGTACCCTCCCTCTTTGCTCTCACACTTTCCATCTCAATTGCATTGACGTTTGGCTCCGTTCAAACGCTAGTTGTCCTGTATGTCGCTCCTGTCTTGTTGAGGAGGACTATCTGCCCAAACGCTCTAATGCATCTAGTTCCGATCGGACCTTGTCGTCGGAGAGAATGGTCGTCATCGACATCCCTGCCACCACATCACCATCGTAG 528 0.483 MDNQMFGTMFVLCSFLVASCMLVVYLVVHTYRRFLPKSPLVESPQHNVESTTMEEEEEEEEVAQGLDESIINAIPSFIYTTTKSEQEQESRAECAVCLEEFQDNNHIRTLPLCSHTFHLNCIDVWLRSNASCPVCRSCLVEEDYLPKRSNASSSDRTLSSERMVVIDIPATTSPS 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04141 175 SMART ring_2 94 135 IPR001841 -
Mepo3g04141 175 PANTHER RING-H2 FINGER PROTEIN ATL16 13 168 IPR044600 GO:0016567|GO:0016740
Mepo3g04141 175 CDD RING-H2_EL5-like 93 136 - -
Mepo3g04141 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 140 IPR013083 -
Mepo3g04141 175 FunFam E3 ubiquitin-protein ligase ATL6 54 142 - -
Mepo3g04141 175 Pfam Ring finger domain 93 136 IPR001841 -
Mepo3g04141 175 SUPERFAMILY RING/U-box 93 142 - -
Mepo3g04141 175 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04141 Mepo-Chr3 50528851 50529378 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04141 62 174 Rapid Response to Elicitors AT3G05200 37.168 1.50e-24 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04141 - K19041 mtr:11424482 223.016