Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04121 ATGCCTTCTTCGTCTTCACCTGTTCTTCCCAGTCTTATGGAAAGCAATTATATGAAACCCCCGGATTCTTTTCATCGTTCACCTGTCAGGGGTCTGACAGCAAATCCTGCCTCATTGCAAGCTACATCATCGTATCCGATCAGAAGTGTTCGACCGGTGTTTTCAACCAATGCTGAATGTCCTGGCGACGTCCCTTTTCCTCCCGTTTCACAGCATGATAGGCAATATCAAGATTCTCCCTTCGCTTCTCAGGCATTAAGTGACAATGTGTGTTCGGAAATCCACTCAGCAACATTCACTTCCCACCTTCAAGAAAATGATGATATATCGTGGGGACCAGATCCATTACCGGATATTCTTGATTTTCCTGAAATTTTTTCTGTCCAGCATGATCAGGTGGAAAGCAGTGCTTGTTACATGAATGAAGACAATGTCAAAAAAACTGATTTTGGGGAGTGGGTTGAACAACTAATGACAAGTGATGATTCTGTTAATCCAAATTGGAGTCAGCTTCTTGGTGATGACAATGTTGTTGAACCAACACAAAAGGCAATGCAGGTTTCTCAGAAGCAGCATACGCCATCTGGAGAAGTTAACAATCTTTGTAATCCAGCTTCAGCATCGACATCGACTGCATCTCAAACTAAGCCTAGAATGCGTTGGAGTCCAGAACTTCATGAAGCTTTTGTGGAAGCAGTCAACCAGCTTGGTGGTAGCGAGAAGGCTACTCCAAAAGGTGTCTTGAATCTAATGAATGTTGAGGGCCTTACCATCTATCATGTAAAAAGCCACCTCCAGAAGTATAGAACTGCCAGATACAAACCCGAGTCACCAGAAGAAACTTCTGAGAAAAAGATGAGTTCAATTGAGGAAATGAAATCTCTAGACTTGAAAACGAGTAAGGGAATCACTGAAGCATTAAGGTTGCAGATGGAACTTCAGAAGCGGCTTCACGAACAACTTGAGATTCAAAGGAAGTTGCAGATTCAAATTGAAAACCAAGGGAAACATCTTGAGATGATGTTTGAGAAACAGAAACAGATCGGTGACAACAAGGGCCCTTCCCCTTCAAATGCACCTTCTGCTGCAGTGTTGGACACAACGTTACCTTCTTCTTCCGTGGACAAATTAATTACTTCAAAAGATGAACATGATAAATCAGGATGTAACGCTGACATTCCTAAAGACATACCCGGAGAAAGTTCCCATGATGTAAGCAGAAAGCAAATGGCAGATGAAGCTGAAGTTACCAATGAACATGAGAGGGTAGATGATCAGTTTTCTGACGTACCTCCAACAAAACGGGTGAAGATTCAATGA 1320 0.425 MPSSSSPVLPSLMESNYMKPPDSFHRSPVRGLTANPASLQATSSYPIRSVRPVFSTNAECPGDVPFPPVSQHDRQYQDSPFASQALSDNVCSEIHSATFTSHLQENDDISWGPDPLPDILDFPEIFSVQHDQVESSACYMNEDNVKKTDFGEWVEQLMTSDDSVNPNWSQLLGDDNVVEPTQKAMQVSQKQHTPSGEVNNLCNPASASTSTASQTKPRMRWSPELHEAFVEAVNQLGGSEKATPKGVLNLMNVEGLTIYHVKSHLQKYRTARYKPESPEETSEKKMSSIEEMKSLDLKTSKGITEALRLQMELQKRLHEQLEIQRKLQIQIENQGKHLEMMFEKQKQIGDNKGPSPSNAPSAAVLDTTLPSSSVDKLITSKDEHDKSGCNADIPKDIPGESSHDVSRKQMADEAEVTNEHERVDDQFSDVPPTKRVKIQ 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04121 439 MobiDBLite consensus disorder prediction 1 37 - -
Mepo3g04121 439 MobiDBLite consensus disorder prediction 270 291 - -
Mepo3g04121 439 FunFam Myb family transcription factor 215 273 - -
Mepo3g04121 439 NCBIfam myb-like DNA-binding domain, SHAQKYF class 216 270 IPR006447 GO:0003677
Mepo3g04121 439 MobiDBLite consensus disorder prediction 347 439 - -
Mepo3g04121 439 MobiDBLite consensus disorder prediction 377 431 - -
Mepo3g04121 439 Gene3D - 215 274 - -
Mepo3g04121 439 Pfam Myb-like DNA-binding domain 218 269 IPR001005 -
Mepo3g04121 439 Coils Coil 304 324 - -
Mepo3g04121 439 MobiDBLite consensus disorder prediction 189 218 - -
Mepo3g04121 439 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 185 406 IPR044848 GO:0003700
Mepo3g04121 439 SUPERFAMILY Homeodomain-like 214 270 IPR009057 -
Mepo3g04121 439 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 213 273 IPR017930 -
Mepo3g04121 439 Pfam MYB-CC type transfactor, LHEQLE motif 303 347 IPR025756 -
Mepo3g04121 439 MobiDBLite consensus disorder prediction 350 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04121 Mepo-Chr3 50372792 50376740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04121 93 359 G2-like Transcription Factor Family AT3G04450 50.530 1.04e-80 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Mepo3g04121 Myb_DNA-binding 1.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04121 - - mtr:25499705 812.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g04121 3 50372792 50376740 Mepo3g04121 3 50372792 50376740 ECH
Mepo3g04121 3 50372792 50376740 Mepo4g03264 4 42150762 42155092 PCT