Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04101 ATGGTTGTAAAAGTGAAGAGAGAAAATCTTGAAGCATGCATGACATGTCCTCTTTGTCATAAGCTACTCAAAGATGCTACAACCATATCTCTATGCCTTCATACTTTTTGTAGGAATTGTATACATGAGAAACTTTCAGATGAAGAGGTTGATTCCTGTCCAGTATGCAACATTGATCTGGGTATCCTTCCTGTTGACAAACTCAGGCCTGATCACAATCTGCAAGATATTAGGACCAAAATATTCCCATGTAAACGACATAAGGTTAAAGCCGAAGAAGTTGTTCCCTCAACACCCCTGCCACCAAAAAGGAAGGAAAGATCACTTTCATCATTGGTGGTCAGTGCTCCCAAAGTTTCAACACATACCACCTTTACAGGAAAGAGAACAAAAACTGCTACAAGAAAGGCCGCTGCTTTACGTGGATGCAGTTTTATCCCTGAAGAGTCCATAAAGAAAGAAGAAGCACACAATGAAGATAATCCGGATTCTTCAATAGCTGAGACTTCTAAGAAGAATAGACCCAACGAAGATACAGACAACAATATAGACGTTACAGAAGGGAAGGCTGATCTCTGGACGCCCTTGAACTGTCTCGTCGAAGCAGCCAATAGAACAAAGTCGTCCAGATCAAATTTACAAGGGACTCCTCTTACCAAATTAGAGTCTCCAACTACTCCTCATGGTGGACTAGAGATGTCTGAAATTACGACCAAATCAGAGCCACCTACATCTGTTCAGAGCGAATTACACATGCCTAAAACCAAGAACAAGAGTAATGGACATAAAACAAAGTTTGGAGATGACAAGGCGGGAAACACTATGCCTTCAGGACCGGTGAAGCGAAAAAGGATGCGTCCTTCTAAACAGAAGAGAGCAGCAGCATTTGAGATGTCTGCCTCAGCACAACTCATGTTAGATGCAACAGAGAGCAGGTGCAACAGGAAAAACAATCCTATTTGGTTTACATTAGTTGCTTCAGAAGACCAGAATGGAGAAGTTTCCTTGCCACAGATCTCGGCTTGCTACATAAGAATAAAGGATGGTACTGTGCCTGTCTCGTATATTCAAAAGTACCTCATGAAGAAACTTAATCTTGCTAGCGAAGCTGAGGTTGAAATAATGTGCCGGGGTCAATCTGTGCTCCCAACATTGCAACTGCATAACTTAGTAGATCTGTGGTTCTGCACAGCATCAACATCGAAAAAGTTACCGGCATCTGTGGGCTCTTCGGCTAAGGACTTTGTGATGGCTTTATCGTACTGTCGGAAGAACTTACCTCATTGA 1287 0.4235 MVVKVKRENLEACMTCPLCHKLLKDATTISLCLHTFCRNCIHEKLSDEEVDSCPVCNIDLGILPVDKLRPDHNLQDIRTKIFPCKRHKVKAEEVVPSTPLPPKRKERSLSSLVVSAPKVSTHTTFTGKRTKTATRKAAALRGCSFIPEESIKKEEAHNEDNPDSSIAETSKKNRPNEDTDNNIDVTEGKADLWTPLNCLVEAANRTKSSRSNLQGTPLTKLESPTTPHGGLEMSEITTKSEPPTSVQSELHMPKTKNKSNGHKTKFGDDKAGNTMPSGPVKRKRMRPSKQKRAAAFEMSASAQLMLDATESRCNRKNNPIWFTLVASEDQNGEVSLPQISACYIRIKDGTVPVSYIQKYLMKKLNLASEAEVEIMCRGQSVLPTLQLHNLVDLWFCTASTSKKLPASVGSSAKDFVMALSYCRKNLPH 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04101 428 SMART ring_2 16 56 IPR001841 -
Mepo3g04101 428 SUPERFAMILY RING/U-box 10 80 - -
Mepo3g04101 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 105 IPR013083 -
Mepo3g04101 428 ProSiteProfiles Zinc finger RING-type profile. 16 57 IPR001841 -
Mepo3g04101 428 MobiDBLite consensus disorder prediction 148 185 - -
Mepo3g04101 428 MobiDBLite consensus disorder prediction 230 254 - -
Mepo3g04101 428 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 426 IPR044807 GO:0004842
Mepo3g04101 428 MobiDBLite consensus disorder prediction 206 223 - -
Mepo3g04101 428 MobiDBLite consensus disorder prediction 148 188 - -
Mepo3g04101 428 ProSitePatterns Zinc finger RING-type signature. 32 41 IPR017907 -
Mepo3g04101 428 Gene3D - 287 405 - -
Mepo3g04101 428 Pfam Zinc finger, C3HC4 type (RING finger) 16 56 - -
Mepo3g04101 428 MobiDBLite consensus disorder prediction 206 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04101 Mepo-Chr3 50203338 50208246 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04101 1 347 C3H Transcription Factor Family AT2G30580 43.597 7.23e-83 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04101 K16277 - gmx:100783999 644.425