Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04078 ATGTTGGATGAAAGAGGAGAGCATTTTGAATTTGAGCAATTGAGGAGTACTACTACTAGTCTTCTTCGTTCGTCTTCTTCTGTTGCAAACATCAACAACACCTTCCACCACATACCCTTAATTCCTTCTACTTCTACTTCCAATTCTTATTCTCCTCATGATCAATTTCCACTTCAAACTCAAACAAACCTCTTCCACCCATCAATATTATCATTGCCCCACCACTCTCCTAACACCACTACCTTTAATTCAAATTCAATCAACTTCCACATCCAAACTCGACCACCGTTGATGATCATCGATTCCAGCTGGACCAACGACGAACTTCTTGCACTCTTCAAGATCACATCTACCATCCACAATTTCTTCCCAGATCAACTCATCACATGGGACCATGTCTCAAGTAAGCTAGCTGAGCTTGGGATCAAGAAGAGTGCTCAAAATTGTAAGGAGAAGTTTGAACATGAGAACACATCATTTTTTAAGATTCATAACAATCATAATGATAATAATTTCCCCCGTTTTGTTAGCGAGCTTCAAGATCTTTATCAAGGTGGTGGTGTTAGTACTGTTGATAAACAACCAAACCCTGACGAAAACGAAAACACCCAACACGAAGAAGATGATTTGAGAGATGATAGAGTAGAGACCAAACAATGTGATGATGATGACGACAAGGTGATGATGGAGAAATCAAAGAAGAAAAAGAGGAAGAGGCGCCGTGATAGATTTGAAATGTTGAAGAATTTTTGTGAGACAGTGGTTAACAAAATAATAGCACAACAAGAAGAAATACAAAATAAGCTACTTGAAGACATGCTCAAAAGAGATCAAGAAAAGCTTGCTAGAGAGGAAGCATGGAAAAAACAAGAGATTGAAAGAATGAACATGATGGTACAACAACAACAAGCTATTGCAATTGATAGACAAGGCAACATCATTGAATTCTTGAACAAATATCTAGCCACAGGATATTCTTCTTCTTCTTCACAATTGCACTCACAAAACCCTAATAATCCTTCTAACAATCTAGAATCAAAAACACCTTTTTCTAATGTGATAGCAGATCAAAACCCTAGCTCAAGTGACACAGAGTACTCAAATTCCACTTCTACCCTTGTTGTGCCTACAATAATGGAGAAATTAGAGGATAGGAGAAGGTGGCCAAGAGATGAAGTATTGGCACTCATAAACCTCAAGTCTACTACAAGTGTTATAAACAGAAGCAACAATAATGTTGAAGGAAATAGTAATAAGGGACCTTTGTGGCAGAGAATCTCTAAAGGGATGTTTGAGTTGGGATACAAGAGAAGTGCAAAGAGGTGTAAAGAAAAATGGGAAAATATAAACAAGTATTTTAAAAAGACAAAGGATATTGTTGTGAATAAGAAGAAAAGGTCCACGGATTCTAGGACTTGTCCTTATTTTCATCAACTCAGTTCTTTGTATAATCAGCAGCAGCAGCAGCAGGGAAAAATAATTGATCCTCAACTAAAAAATCCAACCTCCAATTCAAATGGCCATATAGTAGACGATCCACCCCAAGCTCAGTCTTCTGATTCTCCAATGGGGGAGCTAGTATAA 1584 0.3775 MLDERGEHFEFEQLRSTTTSLLRSSSSVANINNTFHHIPLIPSTSTSNSYSPHDQFPLQTQTNLFHPSILSLPHHSPNTTTFNSNSINFHIQTRPPLMIIDSSWTNDELLALFKITSTIHNFFPDQLITWDHVSSKLAELGIKKSAQNCKEKFEHENTSFFKIHNNHNDNNFPRFVSELQDLYQGGGVSTVDKQPNPDENENTQHEEDDLRDDRVETKQCDDDDDKVMMEKSKKKKRKRRRDRFEMLKNFCETVVNKIIAQQEEIQNKLLEDMLKRDQEKLAREEAWKKQEIERMNMMVQQQQAIAIDRQGNIIEFLNKYLATGYSSSSSQLHSQNPNNPSNNLESKTPFSNVIADQNPSSSDTEYSNSTSTLVVPTIMEKLEDRRRWPRDEVLALINLKSTTSVINRSNNNVEGNSNKGPLWQRISKGMFELGYKRSAKRCKEKWENINKYFKKTKDIVVNKKKRSTDSRTCPYFHQLSSLYNQQQQQQGKIIDPQLKNPTSNSNGHIVDDPPQAQSSDSPMGELV 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04078 527 Coils Coil 260 280 - -
Mepo3g04078 527 PANTHER FI21293P1 101 519 - -
Mepo3g04078 527 CDD GT1 386 457 - -
Mepo3g04078 527 MobiDBLite consensus disorder prediction 486 527 - -
Mepo3g04078 527 MobiDBLite consensus disorder prediction 207 231 - -
Mepo3g04078 527 MobiDBLite consensus disorder prediction 327 369 - -
Mepo3g04078 527 Pfam Myb/SANT-like DNA-binding domain 103 177 IPR044822 -
Mepo3g04078 527 Pfam Myb/SANT-like DNA-binding domain 385 481 IPR044822 -
Mepo3g04078 527 SMART sant 384 452 IPR001005 -
Mepo3g04078 527 SMART sant 100 159 IPR001005 -
Mepo3g04078 527 ProSiteProfiles Myb-like domain profile. 385 450 IPR001005 -
Mepo3g04078 527 MobiDBLite consensus disorder prediction 186 240 - -
Mepo3g04078 527 Gene3D - 388 455 - -
Mepo3g04078 527 Gene3D - 104 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04078 Mepo-Chr3 50017354 50019287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04078 104 485 Trihelix Transcription Factor Family AT5G28300 40.347 2.66e-76 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Mepo3g04078 Myb_DNA-bind_4 2.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04078 - - tpra:123890829 558.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g04078 3 50017354 50019287 Mepo3g04078 3 50017354 50019287 ECH
Mepo3g04078 3 50017354 50019287 Mepo4g03302 4 42587886 42590437 PCT