Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04009 ATGGACCATCAAGGGCATAACCAGAATCCGCAAATGGGGGTTGTCGGTAGCGGCAGTCAAATGCCGTATGGATCTAACCCATATCAGCCAAACCAAATGACTGGGGCCCCAGGATCCGTTGTTACATCAGTCGGGGGCATGCAATCCACTGGTCAACCTGCTGGAGCTCAGCTGGGTCAGCATCAACTTGCTTACCAGCATATCCATCAGCAGCAACAGCAGCAACTTCAGCAACAGCTGCAAAACTTCTGGTCAAAACAGTACCAGGAAATTGAAAAGGTTACTGATTTCAAGAACCACAGCCTTCCTCTGGCAAGGATCAAGAAGATCATGAAGGCTGATGAGGATGTTAGAATGATATCAGCTGAAGCACCTGTCATATTTGCAAGGGCCTGTGAGATGTTCATATTGGAGTTAACCCTGCGCTCATGGAACCACACTGAAGAGAACAAAAGAAGGACACTTCAGAAGAATGATATTGCAGCTGCAATCACTAGGACTGATATCTTTGATTTCCTGGTTGACATTGTGCCTCGTGAGGACCTGAAAGATGAAGTGCTGGCTTCAATTCCAAGAGGAACAATGCCTGTTGCTGGGCCTGCTGATGCTCTTCCTTACTGCTACATGCCACCTCAGCATGCCTCCCAAGTTGGAACTGCTGGTGTCATAATGGGCAAGCCTGTGATGGACCCAAACATGTATGCTCAGCAACCTCATCCCTACATGGCACCACAAATGTGGCCACAGCCTCCGGAACAGCGACCACCATCTCCAGATCACTAG 783 0.4891 MDHQGHNQNPQMGVVGSGSQMPYGSNPYQPNQMTGAPGSVVTSVGGMQSTGQPAGAQLGQHQLAYQHIHQQQQQQLQQQLQNFWSKQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADALPYCYMPPQHASQVGTAGVIMGKPVMDPNMYAQQPHPYMAPQMWPQPPEQRPPSPDH 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04009 260 MobiDBLite consensus disorder prediction 243 260 - -
Mepo3g04009 260 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Mepo3g04009 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 60 195 - -
Mepo3g04009 260 MobiDBLite consensus disorder prediction 1 25 - -
Mepo3g04009 260 SUPERFAMILY Histone-fold 72 173 IPR009072 GO:0046982
Mepo3g04009 260 FunFam Nuclear transcription factor Y subunit gamma 66 179 - -
Mepo3g04009 260 Pfam Core histone H2A/H2B/H3/H4 62 164 IPR007125 GO:0003677
Mepo3g04009 260 MobiDBLite consensus disorder prediction 235 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04009 Mepo-Chr3 49441133 49443814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04009 1 247 CCAAT-HAP5 Transcription Factor Family AT1G08970 62.097 9.70e-88 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Mepo3g04009 CBFD_NFYB_HMF 5.8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04009 K08066 - gmx:100527803 422.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g04009 3 49441133 49443814 Mepo4g03381 4 43357173 43359727 ECH
Mepo3g04009 3 49441133 49443814 Mepo3g04009 3 49441133 49443814 ECH
Mepo3g04009 3 49441133 49443814 Mepo4g03381 4 43357173 43359727 PCT