LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo3g03997	ATGCAAGACATTTTCGGATCAGTTCGCCGGTCACTGGTATTCCGTGCTTCACCGGAGAACAACGAAGATCATCATCATTCAATCGGAGTAGGAGGAACAACAACCCTAGTTGATAAGATCGGTTATTGCATCCGTAATTCTAGAGTTTTCTCTAAACCTTCTCCTCCTATTCCGCCTCCAATTCGATGGCGGAAAGGCGAGTTGATCGGTTGTGGTGCCTTTGGTCATGTTTACGTTGGTATGAATCTCGATTCTGGAGAGCTTCTTGCTGTTAAACAGGTTTTGATTGCAGCAAGTAGTGCTTCCAAAGAGAAGGCACAGGCTCACGTAAAAGAGCTTGAGGAAGAAGTCAAACTGCTTAAAGATCTTTCACATCCCAACATTGTTAGATATTTGGGTACTGTTAGAGAAGAAGATACCTTAAATATTCTCCTAGAGTTTGTCCCTGGTGGATCCATATCTTCACTCTTGGGGAAGTTTGGAGCTTTTCCTGAGGCGGTCATAAGAACTTACACCAAGCAGATATTGCTTGGACTTGAGTACTTGCACAAAAATGGAATCATGCACAGGGACATTAAGGGGGCCAACATTCTTGTAGATAATAAAGGATGCATAAAACTTGCGGATTTTGGAGCATCCAAACAGGTCGTTGAGCTGGCTACCATGTCTGGTGCCAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGTCATAGCTTCTCTGCTGACATATGGAGCGTGGGCTGTACAGTGATTGAGATGGCCACTGGAAAGCCTCCTTGGAGCCAGCAATACCAACAAGAGGTTGCTGCTCTCTTCCATATAGGGACAACTAAGTCTCATCCACCAATCCCTGATCATCTCTCTTCTGGAGCAAAAGATTTTCTGCTAAAGTGCTTGCAGAAGGAACCAATTTTGAGGCTATCAGCATCAGAACTTCTTCAGCATCCCTTTGTTACCGGTGAAACTGTGGATTTGGCCCCTCAGTCATCTACTGCCATGGGAAGTTTTGGAGCTTCTTCACCGTCATCATGTGCTCCAAACGTTGAATCCTTACTTTGCTCAACAGTAAATCCTCAGGATTCGGGAAATAATCATTTATGGGGAATGAGCAATGATGATGACATGTGTGTGATTGATGACAACGAAGAGTTCTCAGAGTGTGATATCAAATACAAGTCATTGATGCCAGATAATATTGAGAGTTTCAACCCGATGTCTGATCCCTCTGATGATTGGGGGTGTAAATTTGATGCAAGTCCAGAACTGGAAAATAGAGAAGTTAGTCTGGACACTGATGAAGGTTACATGTCACGTGTTCAACTGGAGTCCAATAAGGAACAGAAAGATTTACCCATTCCATGTGTGCCATCTCTGTCAGAAGAAGATGAGGAGCTCACAGAGGTCAAAATTAGAGCTTTTTTGGATGAGAAGGCTCTTGAACTGAAAAAATTGCAGACACCTTTATATGAAGAGTTTTTCAACAGTTTAAATGCATCTTGTTCTCCCACTGTGATTGACAGCCCAAGTGATGATATCTCCGGTCGAAAATACTTGAAATTGCCTCCTAAAAGCAAGTCACCAAGTCGGATACCAAATAGTTCTCCATCTAAAGCAGTTGACAATGCTGGAAGTCCTGGAAGTAATGGCAGGTCAACCGTTGGCAATGTAGATAGTCATGGTTCACAGGATGTTCCAGCATCTCCCATTAATGAACGAAAAGGAATGACAGTTGACTCTCAACAGGAGCCCTTTAGCCCAAGTTTAAGCTTTTCCGAGAGACAGAGGAAGTGGAAAGAAGAGCTTGACCAGGAGCTTGAGAGAAAACGAGAAATGATGCGCCAAGCTAATATGGCAGGAAAGACATCCTCACCAAAGGATCGAGCTTTACATCGACAGAGAGAGCGGACAAGATTTGCTTCTCCCGGCTAA	1953	0.4373	MQDIFGSVRRSLVFRASPENNEDHHHSIGVGGTTTLVDKIGYCIRNSRVFSKPSPPIPPPIRWRKGELIGCGAFGHVYVGMNLDSGELLAVKQVLIAASSASKEKAQAHVKELEEEVKLLKDLSHPNIVRYLGTVREEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQILLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATMSGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAALFHIGTTKSHPPIPDHLSSGAKDFLLKCLQKEPILRLSASELLQHPFVTGETVDLAPQSSTAMGSFGASSPSSCAPNVESLLCSTVNPQDSGNNHLWGMSNDDDMCVIDDNEEFSECDIKYKSLMPDNIESFNPMSDPSDDWGCKFDASPELENREVSLDTDEGYMSRVQLESNKEQKDLPIPCVPSLSEEDEELTEVKIRAFLDEKALELKKLQTPLYEEFFNSLNASCSPTVIDSPSDDISGRKYLKLPPKSKSPSRIPNSSPSKAVDNAGSPGSNGRSTVGNVDSHGSQDVPASPINERKGMTVDSQQEPFSPSLSFSERQRKWKEELDQELERKREMMRQANMAGKTSSPKDRALHRQRERTRFASPG	650

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo3g03997	650	MobiDBLite	consensus disorder prediction	511	650	-	-
	Mepo3g03997	650	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	187	199	IPR008271	GO:0004672\|GO:0006468
	Mepo3g03997	650	FunFam	Mitogen-activated protein kinase kinase kinase 2	62	353	-	-
	Mepo3g03997	650	Coils	Coil	96	123	-	-
	Mepo3g03997	650	MobiDBLite	consensus disorder prediction	600	622	-	-
	Mepo3g03997	650	Pfam	Protein kinase domain	64	326	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mepo3g03997	650	ProSitePatterns	Protein kinases ATP-binding region signature.	69	92	IPR017441	GO:0005524
	Mepo3g03997	650	SUPERFAMILY	Protein kinase-like (PK-like)	62	327	IPR011009	-
	Mepo3g03997	650	Coils	Coil	602	626	-	-
	Mepo3g03997	650	FunFam	Serine/threonine-protein kinase STE11	60	153	-	-
	Mepo3g03997	650	MobiDBLite	consensus disorder prediction	534	573	-	-
	Mepo3g03997	650	SMART	serkin_6	63	326	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mepo3g03997	650	Gene3D	Transferase(Phosphotransferase) domain 1	62	344	-	-
	Mepo3g03997	650	ProSiteProfiles	Protein kinase domain profile.	63	326	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mepo3g03997	650	MobiDBLite	consensus disorder prediction	581	599	-	-
	Mepo3g03997	650	CDD	STKc_MAPKKK	62	326	-	-
	Mepo3g03997	650	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	29	338	-	-
	Mepo3g03997	650	MobiDBLite	consensus disorder prediction	632	650	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo3g03997	Mepo-Chr3	49357802	49364401	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo3g03997	1	650	MAP Kinase Kinase Kinase	AT1G54960	57.163	0.0	684

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Mepo3g03997		Pkinase	2.1e-72	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo3g03997	K20606		-	gmx:100807537	1010.36